Detailed information NTG0681990

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: M0696_RS19045
• Genome accession: NZ_CP096590
• Coordinates: 3757821..3758966 (+)
• Length: 381 a.a.
• NCBI ID: WP_166847136.1
• Uniprot ID: -
• Organism: Bacillus rugosus strain A78.1
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3752821..3763966

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0696_RS19025 (M0696_19025)	-	3752830..3754113 (+)	1284	WP_222142227.1	pitrilysin family protein	-
M0696_RS19030 (M0696_19030)	-	3754110..3754811 (+)	702	WP_248602283.1	bacteriocin biosynthesis protein AlbG	-
M0696_RS19035 (M0696_19035)	-	3754817..3756193 (-)	1377	WP_222142229.1	YncE family protein	-
M0696_RS19040 (M0696_19040)	-	3756232..3757593 (-)	1362	WP_222142230.1	YncE family protein	-
M0696_RS19045 (M0696_19045)	rapF	3757821..3758966 (+)	1146	WP_166847136.1	tetratricopeptide repeat protein	Regulator
M0696_RS19050 (M0696_19050)	-	3758950..3759069 (+)	120	WP_166847133.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
M0696_RS19055 (M0696_19055)	-	3759170..3759574 (+)	405	Protein_3702	YbaK/EbsC family protein	-
M0696_RS19060 (M0696_19060)	speB	3759606..3760478 (-)	873	WP_248602284.1	agmatinase	-
M0696_RS19065 (M0696_19065)	speE	3760539..3761369 (-)	831	WP_248602285.1	spermidine synthase	-
M0696_RS19070 (M0696_19070)	-	3761572..3763647 (+)	2076	WP_248602286.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45634.22 Da
• Isoelectric Point: 4.8606

>NTDB_id=681990 M0696_RS19045 WP_166847136.1 3757821..3758966(+) (rapF) [Bacillus rugosus strain A78.1]
MTSVISSSSVGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMGEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELERREYVLAIQFFKKAESKLIFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAYSLAEAEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFERSKMLPSLPQAFFLITQIYFKLGKMDNACEYHIKGKEYSTAAGDTVYLTEFEFLESLYLSGPDEDRI
EKCFVFLESKMMYADIEDFALDVAKYYHQQEDYKKASNYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=681990 M0696_RS19045 WP_166847136.1 3757821..3758966(+) (rapF) [Bacillus rugosus strain A78.1]
GTGACAAGTGTCATATCTTCTTCTTCCGTCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGAAGAGAAATCAAACAAGAGCTGGATCAAATGGGAGAAGATCAAGATCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCATTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATTTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGGCTGCTTGAGTACTACTTTAATTTCTTCAG
AGGCATGTATGAACTGGAACGCCGTGAATATGTATTAGCCATTCAGTTTTTTAAAAAAGCAGAGAGCAAACTGATTTTTG
TAAAAGACAAAATTGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTACTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACGTATGATATTAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCTAACTTTTTGGATTTAAAACAATATGAGAAAGCAATTGCCCATTTTCAAAAAGCTTACTCACTTGCTGAAG
CAGAGCAGCAGCCCCAATTAATGGGAAGAACGCTTTATAACATAGCGCTCTGCAAGCAAAATCAAAACAGTTTTGAATCA
GCGATCGAGTATGTAAAAAAATCTATTCAAGTATTTGAAAGATCTAAAATGCTCCCTTCTCTGCCACAAGCCTTTTTCCT
CATTACACAAATTTATTTTAAATTAGGTAAGATGGATAACGCTTGTGAATATCATATAAAAGGAAAAGAATATTCAACAG
CAGCGGGAGACACTGTGTACTTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCAGATGAGGATCGGATA
GAAAAATGTTTTGTATTTCTTGAAAGTAAAATGATGTATGCTGATATTGAAGATTTCGCACTTGATGTTGCTAAATATTA
TCATCAGCAGGAAGATTACAAAAAAGCATCTAATTACTTTTTAAAGGTTGAAGAGGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (189-253)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.528	100	0.795
rapC	Bacillus subtilis subsp. subtilis str. 168	56.579	99.738	0.564