Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   M0696_RS14020 Genome accession   NZ_CP096590
Coordinates   2742802..2743548 (-) Length   248 a.a.
NCBI ID   WP_248602077.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2737802..2748548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS13995 (M0696_13995) mreC 2738210..2739082 (-) 873 WP_166850044.1 rod shape-determining protein MreC -
  M0696_RS14000 (M0696_14000) mreB 2739113..2740126 (-) 1014 WP_003222607.1 cell shape-determining protein MreB -
  M0696_RS14005 (M0696_14005) radC 2740218..2740913 (-) 696 WP_166850041.1 DNA repair protein RadC -
  M0696_RS14010 (M0696_14010) - 2740950..2741519 (-) 570 WP_248602075.1 Maf family nucleotide pyrophosphatase -
  M0696_RS14015 (M0696_14015) - 2741670..2742668 (-) 999 WP_248602076.1 SPOR domain-containing protein -
  M0696_RS14020 (M0696_14020) comC 2742802..2743548 (-) 747 WP_248602077.1 A24 family peptidase Machinery gene
  M0696_RS14025 (M0696_14025) - 2743685..2744977 (-) 1293 WP_248602078.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  M0696_RS14030 (M0696_14030) valS 2745037..2747679 (-) 2643 WP_248602079.1 valine--tRNA ligase -
  M0696_RS14035 (M0696_14035) - 2748127..2748318 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26419.14 Da        Isoelectric Point: 10.0886

>NTDB_id=681974 M0696_RS14020 WP_248602077.1 2742802..2743548(-) (comC) [Bacillus rugosus strain A78.1]
MLPILFILGLILGSFYYTAGRRIPLHLSIIAPRSSCSFCRRTLTPAELIPILSFLFQKGKCKSCGQRISIMYPVIELVAA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILVFFLPFLAGARLISPLDPWYAGLLGAAAGFLFLALI
AAITRGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKGQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMAMG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=681974 M0696_RS14020 WP_248602077.1 2742802..2743548(-) (comC) [Bacillus rugosus strain A78.1]
ATGCTTCCCATTCTTTTTATCCTCGGGCTAATCCTTGGTTCATTTTATTATACGGCCGGGCGCCGTATCCCCTTACATCT
ATCTATTATCGCGCCCCGTTCATCATGCTCGTTTTGCCGGCGGACCTTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTTTTCCAAAAAGGTAAATGTAAAAGCTGCGGGCAGAGGATTTCTATTATGTATCCCGTAATAGAGCTTGTGGCAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTTGAACTGTTTCCTGCTGTTGTGTTTATCTCTCTTCTTAT
CATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGGTTTTCTTTCTTCCCTTTTTGGCGGGTG
CAAGATTGATTTCTCCGCTTGATCCCTGGTATGCCGGCCTGTTAGGTGCTGCCGCCGGGTTTCTATTTCTGGCCTTAATT
GCTGCAATCACCCGTGGAGGAATAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTATGCTCGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCCA
AAGGGCAGCCGCTTCCCTTTGCCCCCGCAATTGCGGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATTAAAATGGCAATGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

92.339

100

0.923