Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   M0696_RS12545 Genome accession   NZ_CP096590
Coordinates   2492545..2493312 (-) Length   255 a.a.
NCBI ID   WP_222143182.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2487545..2498312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS12525 (M0696_12525) - 2487719..2488531 (-) 813 WP_166850690.1 pyruvate, water dikinase regulatory protein -
  M0696_RS12530 (M0696_12530) ccpN 2488556..2489194 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  M0696_RS12535 (M0696_12535) glyS 2489328..2491367 (-) 2040 WP_222143181.1 glycine--tRNA ligase subunit beta -
  M0696_RS12540 (M0696_12540) glyQ 2491360..2492247 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  M0696_RS12545 (M0696_12545) recO 2492545..2493312 (-) 768 WP_222143182.1 DNA repair protein RecO Machinery gene
  M0696_RS12550 (M0696_12550) - 2493349..2493492 (-) 144 WP_003230053.1 YqzL family protein -
  M0696_RS12555 (M0696_12555) era 2493638..2494543 (-) 906 WP_003226207.1 GTPase Era -
  M0696_RS12560 (M0696_12560) - 2494524..2494934 (-) 411 WP_003230049.1 cytidine deaminase -
  M0696_RS12565 (M0696_12565) - 2495053..2495424 (-) 372 WP_166850681.1 diacylglycerol kinase family protein -
  M0696_RS12570 (M0696_12570) ybeY 2495405..2495878 (-) 474 WP_166850678.1 rRNA maturation RNase YbeY -
  M0696_RS12575 (M0696_12575) pgpH 2495879..2498014 (-) 2136 WP_248602002.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29391.07 Da        Isoelectric Point: 8.3072

>NTDB_id=681966 M0696_RS12545 WP_222143182.1 2492545..2493312(-) (recO) [Bacillus rugosus strain A78.1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTTGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDKGTEEKKPNPYLFEFILESFKQLNEGTDPDVITFIAQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRENGFICHRCFEKDPYRVPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=681966 M0696_RS12545 WP_222143182.1 2492545..2493312(-) (recO) [Bacillus rugosus strain A78.1]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAAACGAATAAAATCGTTACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCAAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCATTCTTAATGCAAAAAACAACGGGCCTCGGAACGCTTCAGCAGGGTGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCGTATATTGCTGAGCTAGTCGACAAAGGCACAGAAGAAAAGAAGCC
AAACCCTTATTTGTTTGAATTTATTTTAGAATCGTTTAAACAGCTGAATGAAGGAACAGACCCGGATGTTATCACCTTCA
TTGCTCAAATGAAGATGCTCGGTGTCATGGGGCTGTATCCTGAGCTGAATCACTGTGTGCATTGTAAAAGCCAGGACGGG
ACCTTTCATTTTTCTGTCCGTGAAAACGGTTTTATTTGCCACCGCTGTTTTGAAAAAGATCCTTACAGGGTTCCGATCAA
ACCGCAAACGGCAAGGCTTTTGAGACTGTTTTATTACTTTGATCTATCGAGGCTGGGCAATGTGTCCTTAAAGCAGGAAA
CGAAAGCTGAATTAAAGCAAGTGATTGATTTATATTATGAAGAATATTCAGGGTTATATTTAAAATCGAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

96.471

100

0.965