Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   M0696_RS11015 Genome accession   NZ_CP096590
Coordinates   2221403..2222026 (+) Length   207 a.a.
NCBI ID   WP_248601958.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2216403..2227026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS10975 (M0696_10975) - 2217542..2218048 (-) 507 WP_166851473.1 PTS glucose transporter subunit IIA -
  M0696_RS10980 (M0696_10980) - 2218187..2218606 (+) 420 WP_166851470.1 Hsp20/alpha crystallin family protein -
  M0696_RS10985 (M0696_10985) - 2218627..2218995 (-) 369 WP_222143045.1 YppG family protein -
  M0696_RS10990 (M0696_10990) - 2219182..2219370 (+) 189 WP_003225611.1 YppF family protein -
  M0696_RS10995 (M0696_10995) - 2219410..2219781 (-) 372 WP_248601956.1 YppE family protein -
  M0696_RS11000 (M0696_11000) - 2219827..2220072 (-) 246 WP_222143047.1 DUF5446 family protein -
  M0696_RS11005 (M0696_11005) sspM 2220271..2220375 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  M0696_RS11010 (M0696_11010) - 2220400..2221362 (-) 963 WP_248601957.1 DUF2515 domain-containing protein -
  M0696_RS11015 (M0696_11015) recU 2221403..2222026 (+) 624 WP_248601958.1 Holliday junction resolvase RecU Machinery gene
  M0696_RS11020 (M0696_11020) - 2222048..2224798 (+) 2751 WP_248601959.1 PBP1A family penicillin-binding protein -
  M0696_RS11025 (M0696_11025) - 2224868..2225362 (-) 495 WP_222143050.1 YpoC family protein -
  M0696_RS11030 (M0696_11030) nth 2225359..2226018 (-) 660 WP_166851444.1 endonuclease III -
  M0696_RS11035 (M0696_11035) dnaD 2226037..2226735 (-) 699 WP_222143051.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 24046.16 Da        Isoelectric Point: 9.6240

>NTDB_id=681954 M0696_RS11015 WP_248601958.1 2221403..2222026(+) (recU) [Bacillus rugosus strain A78.1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSSAKG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=681954 M0696_RS11015 WP_248601958.1 2221403..2222026(+) (recU) [Bacillus rugosus strain A78.1]
GTGATTCGGTATCCTAACGGAAAAACGTTCCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTCA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCGTCGACAACAGATTATAACGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAAGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTAGAGGAAGCAGCGTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

98.551

100

0.986