Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M0696_RS07905 Genome accession   NZ_CP096590
Coordinates   1540705..1540983 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus rugosus strain A78.1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535705..1545983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS07885 (M0696_07885) - 1536892..1537803 (+) 912 WP_222142757.1 ketopantoate reductase family protein -
  M0696_RS07890 (M0696_07890) - 1537833..1539065 (-) 1233 WP_222142758.1 aminopeptidase -
  M0696_RS07895 (M0696_07895) - 1539178..1539312 (-) 135 WP_003238865.1 protein YkpC -
  M0696_RS07900 (M0696_07900) mreBH 1539414..1540421 (-) 1008 WP_248602672.1 cell shape-determining protein MreBH -
  M0696_RS07905 (M0696_07905) abrB 1540705..1540983 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  M0696_RS07910 (M0696_07910) kinC 1541175..1542461 (+) 1287 WP_166853262.1 two-component sensor histidine kinase KinC -
  M0696_RS07915 (M0696_07915) - 1542478..1543305 (+) 828 WP_248602673.1 gamma-glutamylcyclotransferase -
  M0696_RS07920 (M0696_07920) ktrC 1543375..1544040 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  M0696_RS07925 (M0696_07925) ade 1544198..1545931 (+) 1734 WP_248602674.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=681949 M0696_RS07905 WP_003244728.1 1540705..1540983(+) (abrB) [Bacillus rugosus strain A78.1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=681949 M0696_RS07905 WP_003244728.1 1540705..1540983(+) (abrB) [Bacillus rugosus strain A78.1]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGGCGCATTGTCATGCCAATAGAATTAAGACGGGCACTTGA
TATTGCTATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCGTCT
GTTTAATGACCGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGTTAAGTCCTGAAGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576