Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PALA42_RS02060 Genome accession   NZ_CP109931
Coordinates   442695..443060 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PALA42     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437695..448060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA42_RS02030 (PALA42_00409) pyrR 438317..438829 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PALA42_RS02035 (PALA42_00410) ruvX 438941..439375 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  PALA42_RS02040 (PALA42_00411) - 439375..439944 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  PALA42_RS02045 (PALA42_00412) - 439993..440886 (-) 894 WP_003162015.1 energy transducer TonB -
  PALA42_RS02050 (PALA42_00413) gshB 441033..441986 (-) 954 WP_003100943.1 glutathione synthase -
  PALA42_RS02055 (PALA42_00414) pilG 442241..442648 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PALA42_RS02060 (PALA42_00415) pilH 442695..443060 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PALA42_RS02065 (PALA42_00416) - 443111..443647 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PALA42_RS02070 (PALA42_00417) pilJ 443732..445780 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PALA42_RS02075 (PALA42_00418) pilK 445841..446716 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=681935 PALA42_RS02060 WP_003084587.1 442695..443060(+) (pilH) [Pseudomonas aeruginosa strain PALA42]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=681935 PALA42_RS02060 WP_003084587.1 442695..443060(+) (pilH) [Pseudomonas aeruginosa strain PALA42]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364