Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   M0696_RS05835 Genome accession   NZ_CP096590
Coordinates   1156005..1156583 (+) Length   192 a.a.
NCBI ID   WP_166853705.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1151005..1161583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS05815 (M0696_05815) hemAT 1151517..1152815 (-) 1299 WP_166853709.1 heme-based aerotactic transducer HemAT -
  M0696_RS05820 (M0696_05820) - 1152954..1154483 (-) 1530 WP_248602590.1 FAD-dependent oxidoreductase -
  M0696_RS05825 (M0696_05825) - 1154595..1155452 (+) 858 WP_166853707.1 SDR family oxidoreductase -
  M0696_RS05830 (M0696_05830) - 1155479..1155712 (-) 234 WP_166853706.1 IDEAL domain-containing protein -
  M0696_RS05835 (M0696_05835) comK 1156005..1156583 (+) 579 WP_166853705.1 competence transcription factor ComK Regulator
  M0696_RS05840 (M0696_05840) - 1156630..1157529 (-) 900 WP_248602591.1 SDR family oxidoreductase -
  M0696_RS05845 (M0696_05845) - 1157735..1158004 (+) 270 WP_019713871.1 excalibur calcium-binding domain-containing protein -
  M0696_RS05850 (M0696_05850) - 1158045..1159514 (-) 1470 WP_166853704.1 sodium:solute symporter -
  M0696_RS05855 (M0696_05855) - 1159511..1159711 (-) 201 WP_166853703.1 DUF3311 domain-containing protein -
  M0696_RS05860 (M0696_05860) - 1159938..1160300 (-) 363 WP_222142557.1 hypothetical protein -
  M0696_RS05865 (M0696_05865) - 1160453..1161076 (+) 624 WP_166853701.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22396.71 Da        Isoelectric Point: 7.6610

>NTDB_id=681935 M0696_RS05835 WP_166853705.1 1156005..1156583(+) (comK) [Bacillus rugosus strain A78.1]
MSQKTDAPLETYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=681935 M0696_RS05835 WP_166853705.1 1156005..1156583(+) (comK) [Bacillus rugosus strain A78.1]
ATGAGTCAGAAAACTGACGCACCTTTAGAAACGTATGAAGTAAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATTTGTTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGGTTTTTTGGATCAAGCTATGCGGGAAGAAAAGCTGGAACTTATGAAGTGACAAAAATTTCTCACAAACCGCCG
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAACGGGAAAACAATGGAGCTGC
CGATCTCCTGCAATTCGTTCGAGAACCAGGTTTACCGAACAGCATGGCTAAGAACCAAATTCCAAGACAGAATCGAACAC
CGCGTGCCAAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTACGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

97.396

100

0.974