Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   M0696_RS01985 Genome accession   NZ_CP096590
Coordinates   372835..373284 (-) Length   149 a.a.
NCBI ID   WP_136975843.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 367835..378284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS01945 (M0696_01945) - 368244..368335 (+) 92 Protein_340 hypothetical protein -
  M0696_RS01950 (M0696_01950) - 368370..368807 (+) 438 WP_166854330.1 RDD family protein -
  M0696_RS01955 (M0696_01955) - 368908..369240 (+) 333 WP_248602425.1 YckD family protein -
  M0696_RS01960 (M0696_01960) - 369369..369791 (+) 423 WP_166854737.1 MarR family transcriptional regulator -
  M0696_RS01965 (M0696_01965) - 369779..370120 (+) 342 WP_166854328.1 DUF3147 family protein -
  M0696_RS01970 (M0696_01970) - 370140..370868 (+) 729 WP_248602426.1 AAA family ATPase -
  M0696_RS01975 (M0696_01975) bglC 370941..372374 (+) 1434 WP_166854326.1 6-phospho-beta-glucosidase -
  M0696_RS01980 (M0696_01980) nin/comJ 372410..372808 (-) 399 WP_222143522.1 competence protein ComJ Regulator
  M0696_RS01985 (M0696_01985) nucA/comI 372835..373284 (-) 450 WP_136975843.1 DNA-entry nuclease Machinery gene
  M0696_RS01990 (M0696_01990) tlpC 373457..375181 (-) 1725 WP_222143655.1 methyl-accepting chemotaxis protein TlpC -
  M0696_RS01995 (M0696_01995) hxlB 375293..375850 (-) 558 WP_166854324.1 6-phospho-3-hexuloisomerase -
  M0696_RS02000 (M0696_02000) hxlA 375855..376487 (-) 633 WP_222143523.1 3-hexulose-6-phosphate synthase -
  M0696_RS02005 (M0696_02005) hxlR 376719..377081 (+) 363 WP_019713283.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16392.32 Da        Isoelectric Point: 4.3043

>NTDB_id=681924 M0696_RS01985 WP_136975843.1 372835..373284(-) (nucA/comI) [Bacillus rugosus strain A78.1]
MNITMDIIKTILLVIVVIAAAAVGLIKGDFFSADQKTSQTEEYDETIALPSDRYPETAKHIKDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=681924 M0696_RS01985 WP_136975843.1 372835..373284(-) (nucA/comI) [Bacillus rugosus strain A78.1]
GTGAACATCACGATGGATATCATCAAAACGATACTTCTCGTCATCGTCGTCATAGCAGCTGCAGCTGTCGGCCTGATAAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACTGAAGAATATGACGAAACAATCGCCCTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAACATATTAAGGATGCGATAAATGAGGGACACTCAGATGTGTGCACCATCGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAAGACGTACCGCCAAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGAGAGGGAGCTTCAGTAGAATATATTTCTCCCGCTGACAACCGCGGTGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTATCCAGACGGCACAAAGGTTTTATTCACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

93.96

100

0.94