Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   M0696_RS00020 Genome accession   NZ_CP096590
Coordinates   3029..4141 (+) Length   370 a.a.
NCBI ID   WP_222142440.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS00005 (M0696_00005) dnaA 1..1341 (+) 1341 WP_166846090.1 chromosomal replication initiator protein DnaA -
  M0696_RS00010 (M0696_00010) dnaN 1530..2666 (+) 1137 WP_222142439.1 DNA polymerase III subunit beta -
  M0696_RS00015 (M0696_00015) rlbA 2798..3013 (+) 216 WP_003219264.1 ribosome maturation protein RlbA -
  M0696_RS00020 (M0696_00020) recF 3029..4141 (+) 1113 WP_222142440.1 DNA replication/repair protein RecF Machinery gene
  M0696_RS00025 (M0696_00025) remB 4159..4404 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  M0696_RS00030 (M0696_00030) gyrB 4459..6375 (+) 1917 WP_044430220.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  M0696_RS00035 (M0696_00035) gyrA 6585..9050 (+) 2466 WP_248602362.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42334.33 Da        Isoelectric Point: 7.1294

>NTDB_id=681917 M0696_RS00020 WP_222142440.1 3029..4141(+) (recF) [Bacillus rugosus strain A78.1]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=681917 M0696_RS00020 WP_222142440.1 3029..4141(+) (recF) [Bacillus rugosus strain A78.1]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAAACAAATCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACAGGA
CGTCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGGAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCTGTTTACCTGCATGACCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACAATGCTTGATGTTTTGACTGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCGCAGCTCGAAAAATGGGCTCAGCCTATCCATGCGGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTAAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAGGAAATTGAGCGCGGTGTTACGCTGTCAGGGCCTCATCG
TGACGATGTTCTTTTCTACGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCATTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAGCTGGATGATTATCGCCAGTCGCACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGCCAAGCAGGAATGTTCCGTGTGCAAAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.459

100

0.995