Detailed information NTG0681862

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N8A71_RS05745
• Genome accession: NZ_CP109929
• Coordinates: 1189833..1190825 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O6:K2:H1 strain C 691-04A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1184833..1195825

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N8A71_RS05715 (N8A71_05715)	ispD	1184894..1185604 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
N8A71_RS05720 (N8A71_05720)	ispF	1185604..1186083 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N8A71_RS05725 (N8A71_05725)	truD	1186080..1187129 (+)	1050	WP_001566891.1	tRNA pseudouridine(13) synthase TruD	-
N8A71_RS05730 (N8A71_05730)	surE	1187110..1187871 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
N8A71_RS05735 (N8A71_05735)	pcm	1187865..1188491 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
N8A71_RS05740 (N8A71_05740)	nlpD	1188676..1189770 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
N8A71_RS05745 (N8A71_05745)	rpoS	1189833..1190825 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
N8A71_RS05750 (N8A71_05750)	-	1191003..1191554 (-)	552	WP_001179443.1	flavodoxin family protein	-
N8A71_RS05755 (N8A71_05755)	-	1191779..1192822 (+)	1044	WP_001161573.1	MBL fold metallo-hydrolase	-
N8A71_RS05760 (N8A71_05760)	ygbN	1192965..1194329 (-)	1365	WP_000104433.1	GntP family transporter	-
N8A71_RS05765 (N8A71_05765)	ygbM	1194418..1195194 (-)	777	WP_001136915.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=681862 N8A71_RS05745 WP_000081550.1 1189833..1190825(+) (rpoS) [Escherichia coli O6:K2:H1 strain C 691-04A]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=681862 N8A71_RS05745 WP_000081550.1 1189833..1190825(+) (rpoS) [Escherichia coli O6:K2:H1 strain C 691-04A]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715