Detailed information NTG0681691

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: N7L43_RS05955
• Genome accession: NZ_CP109921
• Coordinates: 1230657..1231649 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O2:K2:H1 strain C 237-04
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1225657..1236649

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7L43_RS05925 (N7L43_05925)	ispD	1225718..1226428 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
N7L43_RS05930 (N7L43_05930)	ispF	1226428..1226907 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
N7L43_RS05935 (N7L43_05935)	truD	1226904..1227953 (+)	1050	WP_000568929.1	tRNA pseudouridine(13) synthase TruD	-
N7L43_RS05940 (N7L43_05940)	surE	1227934..1228695 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
N7L43_RS05945 (N7L43_05945)	pcm	1228689..1229315 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
N7L43_RS05950 (N7L43_05950)	nlpD	1229500..1230594 (+)	1095	WP_306163061.1	murein hydrolase activator NlpD	-
N7L43_RS05955 (N7L43_05955)	rpoS	1230657..1231649 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
N7L43_RS05960 (N7L43_05960)	-	1231827..1232378 (-)	552	WP_001179443.1	flavodoxin family protein	-
N7L43_RS05965 (N7L43_05965)	-	1232603..1233646 (+)	1044	WP_171854701.1	MBL fold metallo-hydrolase	-
N7L43_RS05970 (N7L43_05970)	ygbN	1233789..1235153 (-)	1365	WP_000104433.1	GntP family transporter	-
N7L43_RS05975 (N7L43_05975)	ygbM	1235242..1236018 (-)	777	WP_171854702.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=681691 N7L43_RS05955 WP_000081550.1 1230657..1231649(+) (rpoS) [Escherichia coli O2:K2:H1 strain C 237-04]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=681691 N7L43_RS05955 WP_000081550.1 1230657..1231649(+) (rpoS) [Escherichia coli O2:K2:H1 strain C 237-04]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGTGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715