Detailed information NTG0681579

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA39_RS07155
• Genome accession: NZ_CP109920
• Coordinates: 1517839..1518843 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA39
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1512839..1523843

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA39_RS07125 (PALA39_01414)	fghA	1512931..1513782 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA39_RS07130 (PALA39_01415)	ispF	1513853..1514326 (+)	474	WP_023465018.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA39_RS07135 (PALA39_01416)	truD	1514323..1515390 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
PALA39_RS07140 (PALA39_01417)	surE	1515378..1516127 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA39_RS07145 (PALA39_01418)	-	1516160..1516795 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA39_RS07150 (PALA39_01419)	-	1516841..1517734 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA39_RS07155 (PALA39_01420)	rpoS	1517839..1518843 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA39_RS07160 (PALA39_01421)	fdxA	1519270..1519593 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA39_RS07165 (PALA39_01422)	mutS	1519660..1522227 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA39_RS07170 (PALA39_01423)	-	1522353..1523360 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=681579 PALA39_RS07155 WP_003113871.1 1517839..1518843(+) (rpoS) [Pseudomonas aeruginosa strain PALA39]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=681579 PALA39_RS07155 WP_003113871.1 1517839..1518843(+) (rpoS) [Pseudomonas aeruginosa strain PALA39]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653