Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PALA56_RS26780 Genome accession   NZ_CP109919
Coordinates   5742500..5743024 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PALA56     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5737500..5748024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA56_RS26765 (PALA56_05317) aroB 5738616..5739722 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  PALA56_RS26770 (PALA56_05318) aroK 5739772..5740290 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA56_RS26775 (PALA56_05319) pilQ 5740302..5742446 (-) 2145 WP_014603377.1 type 4a pilus secretin PilQ Machinery gene
  PALA56_RS26780 (PALA56_05320) comL/pilP 5742500..5743024 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA56_RS26785 (PALA56_05321) pilO 5743021..5743644 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA56_RS26790 (PALA56_05322) pilN 5743641..5744237 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PALA56_RS26795 (PALA56_05323) pilM 5744237..5745301 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA56_RS26800 (PALA56_05324) - 5745486..5747954 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=681538 PALA56_RS26780 WP_003095836.1 5742500..5743024(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA56]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=681538 PALA56_RS26780 WP_003095836.1 5742500..5743024(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA56]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362