Detailed information NTG0681479

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA56_RS07265
• Genome accession: NZ_CP109919
• Coordinates: 1509273..1510277 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA56
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1504273..1515277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA56_RS07235 (PALA56_01432)	fghA	1504365..1505216 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA56_RS07240 (PALA56_01433)	ispF	1505287..1505760 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA56_RS07245 (PALA56_01434)	truD	1505757..1506824 (+)	1068	WP_014602573.1	tRNA pseudouridine(13) synthase TruD	-
PALA56_RS07250 (PALA56_01435)	surE	1506812..1507561 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA56_RS07255 (PALA56_01436)	-	1507594..1508229 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA56_RS07260 (PALA56_01437)	-	1508275..1509168 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA56_RS07265 (PALA56_01438)	rpoS	1509273..1510277 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA56_RS07270 (PALA56_01439)	fdxA	1510704..1511027 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA56_RS07275 (PALA56_01440)	mutS	1511094..1513661 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA56_RS07280 (PALA56_01441)	-	1513787..1514794 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=681479 PALA56_RS07265 WP_003113871.1 1509273..1510277(+) (rpoS) [Pseudomonas aeruginosa strain PALA56]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=681479 PALA56_RS07265 WP_003113871.1 1509273..1510277(+) (rpoS) [Pseudomonas aeruginosa strain PALA56]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653