Detailed information NTG0681379

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA55_RS06765
• Genome accession: NZ_CP109918
• Coordinates: 1440268..1441272 (+)
• Length: 334 a.a.
• NCBI ID: WP_269972187.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA55
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1435268..1446272

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA55_RS06735 (PALA55_01332)	fghA	1435360..1436211 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA55_RS06740 (PALA55_01333)	ispF	1436282..1436755 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA55_RS06745 (PALA55_01334)	truD	1436752..1437819 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PALA55_RS06750 (PALA55_01335)	surE	1437807..1438556 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA55_RS06755 (PALA55_01336)	-	1438589..1439224 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA55_RS06760 (PALA55_01337)	-	1439270..1440163 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA55_RS06765 (PALA55_01338)	rpoS	1440268..1441272 (+)	1005	WP_269972187.1	RNA polymerase sigma factor RpoS	Regulator
PALA55_RS06770 (PALA55_01339)	fdxA	1441698..1442021 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA55_RS06775 (PALA55_01340)	mutS	1442088..1444655 (-)	2568	WP_078451731.1	DNA mismatch repair protein MutS	-
PALA55_RS06780 (PALA55_01341)	-	1444992..1445975 (+)	984	WP_124074654.1	ATP-binding protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38247.44 Da
• Isoelectric Point: 5.0478

>NTDB_id=681379 PALA55_RS06765 WP_269972187.1 1440268..1441272(+) (rpoS) [Pseudomonas aeruginosa strain PALA55]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKILL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=681379 PALA55_RS06765 WP_269972187.1 1440268..1441272(+) (rpoS) [Pseudomonas aeruginosa strain PALA55]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
TCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGATCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTTGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653