Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   OK116_RS03625 Genome accession   NZ_CP109897
Coordinates   795086..796468 (-) Length   460 a.a.
NCBI ID   WP_024749294.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. fastidiosa strain XYL461     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 790086..801468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK116_RS03600 (OK116_03595) - 791566..791835 (-) 270 WP_004089222.1 HPr family phosphocarrier protein -
  OK116_RS03605 (OK116_03600) - 791828..792220 (-) 393 WP_004083781.1 PTS sugar transporter subunit IIA -
  OK116_RS03610 (OK116_03605) rapZ 792593..793465 (-) 873 WP_004089221.1 RNase adapter RapZ -
  OK116_RS03615 (OK116_03610) hprK 793462..794412 (-) 951 WP_004083779.1 HPr(Ser) kinase/phosphatase -
  OK116_RS03620 (OK116_03615) raiA 794678..794995 (-) 318 WP_004083778.1 ribosome-associated translation inhibitor RaiA -
  OK116_RS03625 (OK116_03620) rpoN/rpoN1 795086..796468 (-) 1383 WP_024749294.1 RNA polymerase factor sigma-54 Machinery gene
  OK116_RS03630 (OK116_03625) lptB 796516..797238 (-) 723 WP_004089219.1 LPS export ABC transporter ATP-binding protein -
  OK116_RS03635 (OK116_03630) lptA 797238..797768 (-) 531 WP_004089217.1 lipopolysaccharide transport periplasmic protein LptA -
  OK116_RS03640 (OK116_03635) lptC 797746..798315 (-) 570 WP_004089215.1 LPS export ABC transporter periplasmic protein LptC -
  OK116_RS03645 (OK116_03640) - 798312..798860 (-) 549 WP_004089213.1 HAD family hydrolase -
  OK116_RS03650 (OK116_03645) - 798878..799879 (-) 1002 WP_011097728.1 KpsF/GutQ family sugar-phosphate isomerase -
  OK116_RS03655 (OK116_03650) - 799904..800168 (+) 265 Protein_661 BolA family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 51113.14 Da        Isoelectric Point: 6.3573

>NTDB_id=681317 OK116_RS03625 WP_024749294.1 795086..796468(-) (rpoN/rpoN1) [Xylella fastidiosa subsp. fastidiosa strain XYL461]
MKARLRTSIGQQLVMTPQLHQSIRLLQMSNAELQLEITAAIESNPLLDWAENQSSETSEATEREVETEDWQAKESAWDIN
GSKSNENDDNNPAERLTTGNTLTDHLLWQLHLSPLSARDYQIGTVLIDAIEEDGYLRELLSTLTATLAPLSVDESELLPV
LRHIQSFDPSGVAARSLAECLTLQLKSLREAIPGRTLALQIVNSPLLEQLPRSGVTGLARELKRPSQDVQQAVELIRGLD
PRPGKKIGDLEVGTYVVPDCVIWRQHGLWQAALLERAFPQVVLHRGYEQLINSCNDANASYLRNQLQEARWLLKGLEARG
ETLLKVVNSLIRHQAGFLEFGQHALRPLTIRELATELALHESTVSRAIAGKYVRTPRGTLPLRTFFASGISTDSGGETSS
SAIQAIIRRLIETENPRKPLSDAKLAELLKTSGIPVARRTIAKYRDAMNISASHERVRVL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=681317 OK116_RS03625 WP_024749294.1 795086..796468(-) (rpoN/rpoN1) [Xylella fastidiosa subsp. fastidiosa strain XYL461]
TTGAAAGCAAGACTGCGAACATCCATCGGACAACAGCTGGTCATGACACCCCAGCTACACCAAAGCATCCGTCTGCTGCA
AATGTCCAACGCCGAATTGCAACTGGAAATCACCGCCGCGATAGAGAGCAATCCACTCTTGGACTGGGCCGAGAACCAAT
CATCGGAGACCAGCGAAGCTACCGAAAGGGAAGTAGAAACAGAAGATTGGCAAGCCAAAGAATCCGCCTGGGATATCAAC
GGCAGTAAAAGCAACGAAAATGACGACAACAACCCTGCTGAACGTCTTACCACCGGGAACACTCTCACTGATCACTTGCT
GTGGCAACTGCACCTCTCCCCACTGTCAGCACGTGATTACCAAATAGGCACCGTCTTGATTGATGCCATAGAAGAAGATG
GTTACCTGCGTGAACTTTTGTCCACACTGACTGCAACCCTGGCCCCGTTATCCGTAGATGAAAGCGAACTGCTACCAGTA
TTACGACACATTCAATCTTTTGACCCGAGCGGCGTGGCTGCACGCTCGCTGGCCGAGTGCTTGACACTGCAACTGAAATC
ATTGAGAGAAGCGATACCCGGACGCACACTTGCACTGCAGATTGTCAACAGCCCACTGCTCGAACAATTGCCGCGCAGTG
GTGTCACCGGACTGGCACGCGAACTGAAACGACCCTCCCAAGACGTCCAACAGGCAGTGGAATTGATCCGTGGACTGGAC
CCTCGCCCAGGTAAGAAAATTGGCGACTTAGAAGTTGGAACCTACGTTGTACCGGACTGTGTGATCTGGCGCCAACATGG
GTTGTGGCAAGCCGCGTTGTTGGAACGTGCATTCCCACAGGTCGTCCTCCACCGCGGCTACGAACAGCTCATCAACAGCT
GCAATGACGCCAATGCGAGCTACCTACGCAACCAACTCCAGGAAGCACGGTGGCTGCTCAAGGGCCTGGAAGCACGCGGT
GAAACCTTGTTAAAAGTGGTAAACAGCCTCATACGTCACCAAGCGGGATTCTTGGAATTCGGCCAACACGCGTTACGTCC
ATTGACTATCCGCGAATTAGCAACGGAACTTGCCCTGCATGAATCCACCGTATCCCGTGCAATTGCTGGCAAGTATGTAC
GCACCCCACGTGGCACCTTACCGCTACGCACCTTTTTCGCTTCAGGAATCAGCACCGACAGCGGCGGAGAGACCTCCAGC
TCTGCCATTCAAGCAATCATCAGACGTCTCATAGAAACTGAAAACCCCCGCAAGCCACTCTCTGACGCCAAACTAGCTGA
ATTACTGAAGACATCCGGTATCCCAGTAGCGCGACGCACCATAGCAAAGTATCGTGATGCTATGAACATCTCCGCATCCC
ACGAACGCGTCCGAGTCCTCTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(300-458)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(94-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

38.4

100

0.417