Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OK116_RS02060 Genome accession   NZ_CP109897
Coordinates   449560..450222 (+) Length   220 a.a.
NCBI ID   WP_004085189.1    Uniprot ID   Q9PEE9
Organism   Xylella fastidiosa subsp. fastidiosa strain XYL461     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444560..455222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK116_RS02045 (OK116_02040) - 444794..446035 (+) 1242 WP_004089276.1 lipoprotein-releasing ABC transporter permease subunit -
  OK116_RS02050 (OK116_02045) lolD 446028..446750 (+) 723 WP_004089270.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OK116_RS02055 (OK116_02050) comA 447098..449575 (+) 2478 WP_038231910.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OK116_RS02060 (OK116_02055) exbB 449560..450222 (+) 663 WP_004085189.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OK116_RS02065 (OK116_02060) - 450227..450664 (+) 438 WP_004089267.1 biopolymer transporter ExbD -
  OK116_RS02070 (OK116_02065) msbA 450682..452430 (+) 1749 WP_004089264.1 lipid A export permease/ATP-binding protein MsbA -
  OK116_RS02075 (OK116_02070) lpxK 452427..453446 (+) 1020 WP_004089261.1 tetraacyldisaccharide 4'-kinase -
  OK116_RS02080 (OK116_02075) - 453853..454554 (-) 702 WP_228446162.1 contractile injection system protein, VgrG/Pvc8 family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24000.41 Da        Isoelectric Point: 8.9727

>NTDB_id=681306 OK116_RS02060 WP_004085189.1 449560..450222(+) (exbB) [Xylella fastidiosa subsp. fastidiosa strain XYL461]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=681306 OK116_RS02060 WP_004085189.1 449560..450222(+) (exbB) [Xylella fastidiosa subsp. fastidiosa strain XYL461]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTATTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGGCGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGGATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATTCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGGTACGTGATTGAGATGGA
GCAAGAGGCAATGCTCTTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCACC
CCAATGCTGTCACCAAGGATTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PEE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

48.744

90.455

0.441