Detailed information NTG0068129

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: JLF32_RS22935
• Genome accession: NZ_AP022533
• Coordinates: 4792139..4793164 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain THO-006
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4787139..4798164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JLF32_RS22915 (THOESC006_44080)	metJ	4788324..4788641 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
JLF32_RS22920 (THOESC006_44090)	yiiX	4788701..4789309 (+)	609	WP_000702296.1	YiiX family permuted papain-like enzyme	-
JLF32_RS22925 (THOESC006_44100)	rpmE	4789370..4789582 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
JLF32_RS22930 (THOESC006_44110)	priA	4789785..4791983 (+)	2199	WP_001305041.1	primosomal protein N'	Machinery gene
JLF32_RS22935 (THOESC006_44120)	cytR	4792139..4793164 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
JLF32_RS22940 (THOESC006_44130)	ftsN	4793256..4794215 (+)	960	WP_000068846.1	cell division protein FtsN	-
JLF32_RS22945 (THOESC006_44140)	hslV	4794308..4794838 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
JLF32_RS22950 (THOESC006_44150)	hslU	4794848..4796179 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
JLF32_RS22955 (THOESC006_44160)	menA	4796246..4797172 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
JLF32_RS22960 (THOESC006_44170)	rraA	4797265..4797750 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
JLF32_RS22965 (THOESC006_44180)	zapB	4797835..4798080 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=68129 JLF32_RS22935 WP_000644904.1 4792139..4793164(+) (cytR) [Escherichia coli strain THO-006]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=68129 JLF32_RS22935 WP_000644904.1 4792139..4793164(+) (cytR) [Escherichia coli strain THO-006]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACTCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCACAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACTATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACAGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGTTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628