Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   OK117_RS11175 Genome accession   NZ_CP109886
Coordinates   2411989..2413599 (-) Length   536 a.a.
NCBI ID   WP_004090372.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. fastidiosa strain CFBP8073     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2406989..2418599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK117_RS11160 (OK117_11170) pilA/pilAI 2407280..2407708 (+) 429 WP_306308946.1 pilin Machinery gene
  OK117_RS11165 (OK117_11175) pilB 2408564..2410297 (+) 1734 WP_058564300.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OK117_RS11170 (OK117_11180) - 2410391..2411803 (-) 1413 WP_058564301.1 sigma-54 dependent transcriptional regulator -
  OK117_RS11175 (OK117_11185) pilS 2411989..2413599 (-) 1611 WP_004090372.1 ATP-binding protein Regulator
  OK117_RS11180 (OK117_11190) sucC 2413854..2415017 (+) 1164 WP_004090371.1 ADP-forming succinate--CoA ligase subunit beta -
  OK117_RS11185 (OK117_11195) sucD 2415046..2415918 (+) 873 WP_004090370.1 succinate--CoA ligase subunit alpha -
  OK117_RS11190 (OK117_11200) - 2416276..2416896 (+) 621 WP_058564302.1 hypothetical protein -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 59135.47 Da        Isoelectric Point: 6.1390

>NTDB_id=681118 OK117_RS11175 WP_004090372.1 2411989..2413599(-) (pilS) [Xylella fastidiosa subsp. fastidiosa strain CFBP8073]
MLFSASLIHRIEFAPQRELYFLALYRILEAGLIAALVFSPVSLLVDPESDPHLGTVVAVGYLLLATILLVWGRNERWFTP
LVFGSTVADILAATLAIHALPKASAGIAMMLLFNVAAAAILLRLRFSMILAWIAGVAMLVEYIWTVLSEGDSSRSLAELL
MFFTSYTAVAYMCHQAAQRARYSQALAEKRRAQIVNLAEINELIIRRMRTGVLVVDAANRIGLSNETAAALLGYDRQLVE
SDYDLATVAPELIMRLKCWRIGRHYEDTPLRLAPDQPEVQPRFVSLLADSGLTLIFLDDVSVVSRRAESLTLLALGRFSA
SLAHEIRNPLAAIKHASQLLEESSNLDKGDQRLLDIILKQCQRTNGIVESVLGLARRERANPENLDLVGFVSRFVDEYRQ
TLSSEYDNLEIQTLHSTVQALVDPRHLYQILAVLTHNALRYGRFPDTPAQVRIEVVYTGGSVGINVLDQGPGIPDAAVLQ
LFQPFFTTSDHGTGLGLYIARELCNANQSNLEYVAIPGGGACFRITLPGPYALIPN

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=681118 OK117_RS11175 WP_004090372.1 2411989..2413599(-) (pilS) [Xylella fastidiosa subsp. fastidiosa strain CFBP8073]
GTGTTGTTCAGCGCTTCGCTGATTCATCGGATCGAATTTGCCCCGCAGCGTGAACTTTATTTTCTCGCGTTGTATCGGAT
CTTGGAGGCTGGATTGATCGCGGCCCTGGTGTTCAGTCCGGTGTCGCTATTGGTGGATCCTGAGAGTGATCCACATTTGG
GCACGGTTGTCGCTGTCGGTTATTTGCTGTTGGCTACCATTTTGTTGGTCTGGGGTCGTAATGAGCGTTGGTTCACGCCA
TTAGTCTTTGGAAGTACTGTCGCCGACATTTTGGCTGCCACTCTTGCTATTCACGCTCTGCCTAAAGCCAGTGCCGGCAT
TGCGATGATGTTGTTGTTTAACGTTGCTGCCGCCGCCATCTTATTGCGGTTGCGTTTCAGCATGATCCTGGCTTGGATTG
CTGGGGTTGCGATGCTTGTGGAATACATCTGGACTGTACTCAGTGAGGGTGACTCCTCACGTTCACTGGCCGAGCTCCTT
ATGTTTTTCACCAGCTACACTGCAGTGGCGTATATGTGTCATCAGGCCGCGCAGCGGGCTAGATATAGCCAAGCTCTGGC
TGAAAAGCGCCGTGCCCAGATAGTCAACTTGGCAGAGATCAATGAGCTGATTATCCGACGTATGCGGACGGGTGTGTTGG
TGGTGGATGCTGCTAATCGAATCGGTTTGAGTAACGAAACTGCAGCTGCGTTGCTGGGATACGACAGACAATTGGTCGAG
AGTGATTACGATCTCGCTACGGTTGCTCCGGAGTTGATAATGCGTCTGAAGTGTTGGCGTATTGGTCGACACTACGAAGA
TACTCCGTTGCGATTAGCGCCTGATCAACCTGAGGTTCAGCCTCGCTTTGTGAGTTTGCTTGCCGACAGTGGATTGACAT
TAATTTTCCTTGATGATGTCAGTGTTGTTTCACGCCGTGCCGAATCGTTGACTTTGTTGGCGCTTGGACGTTTTTCAGCC
AGTTTGGCGCACGAGATTCGTAATCCTTTGGCTGCAATCAAACATGCATCGCAGCTGTTGGAAGAGTCCTCCAATCTTGA
CAAAGGCGATCAAAGGCTGTTGGACATTATTCTAAAGCAGTGCCAGCGGACCAATGGGATTGTGGAGAGCGTGCTTGGTT
TGGCAAGACGCGAACGTGCTAACCCGGAAAATTTGGATTTGGTCGGTTTTGTGTCGCGATTTGTCGATGAATACCGCCAG
ACATTGTCAAGCGAGTATGACAATCTGGAGATACAAACGTTGCACAGTACCGTGCAGGCACTGGTGGATCCACGCCACTT
GTACCAGATCCTCGCTGTCCTTACCCACAACGCGTTGCGTTATGGCCGCTTTCCGGATACTCCGGCACAGGTGCGTATTG
AGGTGGTATATACCGGAGGCAGCGTGGGGATCAATGTCCTTGATCAGGGGCCTGGTATACCCGATGCGGCTGTTTTGCAG
CTTTTTCAGCCTTTTTTCACTACTTCCGACCATGGTACGGGGCTTGGTCTATATATCGCTCGTGAGCTGTGCAATGCGAA
TCAATCCAATCTTGAGTACGTGGCCATTCCAGGGGGAGGGGCTTGTTTCCGGATTACTTTGCCGGGTCCGTATGCATTGA
TTCCGAATTGA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(314-378)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(423-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

37.044

97.201

0.36