Detailed information    

insolico Bioinformatically predicted

Overview

Name   letS   Type   Regulator
Locus tag   OK117_RS09260 Genome accession   NZ_CP109886
Coordinates   2021805..2021969 (+) Length   54 a.a.
NCBI ID   WP_230577752.1    Uniprot ID   -
Organism   Xylella fastidiosa subsp. fastidiosa strain CFBP8073     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2016805..2026969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK117_RS09245 (OK117_09260) - 2017222..2017659 (-) 438 WP_004083618.1 polymer-forming cytoskeletal protein -
  OK117_RS09250 (OK117_09265) - 2017661..2018338 (-) 678 WP_014607439.1 DUF6776 family protein -
  OK117_RS09255 (OK117_09270) - 2019300..2021000 (+) 1701 WP_058564472.1 EAL domain-containing response regulator -
  OK117_RS09260 (OK117_09275) letS 2021805..2021969 (+) 165 WP_230577752.1 histidine kinase Regulator
  OK117_RS09265 (OK117_09280) - 2022971..2023186 (-) 216 WP_233341756.1 hypothetical protein -
  OK117_RS09270 (OK117_09285) bfr 2023258..2023722 (-) 465 WP_004083622.1 bacterioferritin -
  OK117_RS09275 (OK117_09290) - 2023804..2024019 (-) 216 WP_027700186.1 bacterioferritin-associated ferredoxin -
  OK117_RS09280 (OK117_09295) - 2024131..2024703 (-) 573 WP_004089873.1 RNA pyrophosphohydrolase -
  OK117_RS09295 (OK117_09310) metK 2025076..2026287 (-) 1212 WP_004089874.1 methionine adenosyltransferase -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 5954.78 Da        Isoelectric Point: 4.6641

>NTDB_id=681101 OK117_RS09260 WP_230577752.1 2021805..2021969(+) (letS) [Xylella fastidiosa subsp. fastidiosa strain CFBP8073]
MCFEVHDTGICISSEQQIRLFSSFSQADTSTTRLYESTALGLAWLGLAWLGLAK

Nucleotide


Download         Length: 165 bp        

>NTDB_id=681101 OK117_RS09260 WP_230577752.1 2021805..2021969(+) (letS) [Xylella fastidiosa subsp. fastidiosa strain CFBP8073]
ATGTGTTTCGAAGTGCACGATACCGGTATCTGTATTTCTTCCGAACAGCAAATACGACTGTTCTCTTCGTTCAGCCAAGC
TGACACTTCAACCACACGCCTATACGAGAGCACAGCGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCTTGGCAA
AATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letS Legionella pneumophila strain ERS1305867

54.762

77.778

0.426