Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   JLF32_RS17605 Genome accession   NZ_AP022533
Coordinates   3645137..3645742 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain THO-006     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3640137..3650742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLF32_RS17585 (THOESC006_33860) aes 3640278..3641237 (+) 960 WP_000801819.1 acetyl esterase -
  JLF32_RS17590 (THOESC006_33870) hemH 3641234..3642196 (-) 963 WP_001250114.1 ferrochelatase -
  JLF32_RS17595 (THOESC006_33880) adk 3642328..3642972 (-) 645 WP_001313630.1 adenylate kinase -
  JLF32_RS17600 (THOESC006_33890) htpG 3643153..3645027 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  JLF32_RS17605 (THOESC006_33900) recR 3645137..3645742 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  JLF32_RS17610 (THOESC006_33910) ybaB 3645742..3646071 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  JLF32_RS17615 (THOESC006_33920) dnaX 3646124..3648055 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  JLF32_RS17620 (THOESC006_33930) apt 3648184..3648735 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  JLF32_RS17625 (THOESC006_33940) ybaN 3648888..3649265 (-) 378 WP_001188900.1 DUF454 family protein -
  JLF32_RS17630 (THOESC006_33950) priC 3649335..3649862 (+) 528 WP_000858961.1 primosomal replication protein N'' -
  JLF32_RS17635 (THOESC006_33960) rsmS 3649876..3650037 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  JLF32_RS26005 - 3650090..3650188 (-) 99 Protein_3502 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=68109 JLF32_RS17605 WP_001195025.1 3645137..3645742(-) (recR) [Escherichia coli strain THO-006]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=68109 JLF32_RS17605 WP_001195025.1 3645137..3645742(-) (recR) [Escherichia coli strain THO-006]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment