Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OK117_RS01850 Genome accession   NZ_CP109886
Coordinates   449471..450133 (+) Length   220 a.a.
NCBI ID   WP_004085189.1    Uniprot ID   Q9PEE9
Organism   Xylella fastidiosa subsp. fastidiosa strain CFBP8073     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 444471..455133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK117_RS01835 (OK117_01835) - 444705..445946 (+) 1242 WP_058564636.1 lipoprotein-releasing ABC transporter permease subunit -
  OK117_RS01840 (OK117_01840) lolD 445939..446661 (+) 723 WP_038230153.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  OK117_RS01845 (OK117_01845) comA 447009..449486 (+) 2478 WP_058564649.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OK117_RS01850 (OK117_01850) exbB 449471..450133 (+) 663 WP_004085189.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OK117_RS01855 (OK117_01855) - 450138..450575 (+) 438 WP_004089267.1 biopolymer transporter ExbD -
  OK117_RS01860 (OK117_01860) msbA 450593..452341 (+) 1749 WP_004089264.1 lipid A export permease/ATP-binding protein MsbA -
  OK117_RS01865 (OK117_01865) lpxK 452338..453357 (+) 1020 WP_058564635.1 tetraacyldisaccharide 4'-kinase -
  OK117_RS01870 (OK117_01870) - 453765..454454 (-) 690 WP_233341777.1 contractile injection system protein, VgrG/Pvc8 family -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24000.41 Da        Isoelectric Point: 8.9727

>NTDB_id=681065 OK117_RS01850 WP_004085189.1 449471..450133(+) (exbB) [Xylella fastidiosa subsp. fastidiosa strain CFBP8073]
MLELVKAGGWPMLPLLMLGVVALAIVLERLWTLRRNEVLPSGLGREVREWVRRGKLDQNHLESLRRNSPLGALLAAALDV
KGGVREMIRERIEDTGRHLVHRMERFLNALGTIASAGPLLGLLGTVVGMIQMFLGILDYGVGDVNQLAGGIGKALVCTAT
GMIIAIPALIFHRYFKGRITGYVIEMEQEAMLLLDAIDGLQIAIQGRNAEVAHPNAVTKD

Nucleotide


Download         Length: 663 bp        

>NTDB_id=681065 OK117_RS01850 WP_004085189.1 449471..450133(+) (exbB) [Xylella fastidiosa subsp. fastidiosa strain CFBP8073]
ATGCTGGAACTGGTAAAGGCTGGCGGCTGGCCGATGTTGCCGCTGTTGATGTTAGGTGTTGTTGCATTGGCGATTGTGCT
TGAAAGGCTGTGGACTCTGCGTCGTAATGAGGTATTGCCGTCGGGGCTGGGTCGGGAGGTTCGTGAGTGGGTGAGGCGTG
GCAAATTGGACCAAAATCATCTTGAGTCTCTGCGCCGTAATTCTCCGCTTGGTGCGCTATTGGCCGCCGCTTTGGATGTA
AAAGGTGGCGTACGTGAAATGATTCGTGAACGTATTGAGGATACAGGGCGCCATCTGGTGCATCGCATGGAGCGTTTTCT
GAATGCACTCGGTACGATTGCTTCTGCAGGTCCTTTACTTGGTTTGCTAGGTACTGTGGTCGGTATGATTCAAATGTTCC
TGGGGATTCTCGATTATGGCGTGGGCGATGTGAATCAGCTTGCTGGAGGGATTGGCAAGGCATTGGTTTGCACTGCTACA
GGTATGATTATTGCGATTCCCGCTCTGATTTTTCATCGTTATTTCAAGGGGCGAATTACTGGGTACGTGATTGAGATGGA
GCAAGAGGCAATGCTCTTGCTGGATGCGATTGATGGTCTTCAGATTGCTATTCAAGGAAGAAATGCCGAAGTGGCGCACC
CCAATGCTGTCACCAAGGATTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PEE9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

48.744

90.455

0.441