Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M0M92_RS00050 Genome accession   NZ_CP096263
Coordinates   7148..8668 (-) Length   506 a.a.
NCBI ID   WP_032454493.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain KP20-558     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2148..13668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M92_RS00040 (M0M92_00040) hdfR 5845..6666 (-) 822 WP_023291542.1 HTH-type transcriptional regulator HdfR -
  M0M92_RS00045 (M0M92_00045) - 6785..7123 (+) 339 WP_004886877.1 DUF413 domain-containing protein -
  M0M92_RS00050 (M0M92_00050) comM 7148..8668 (-) 1521 WP_032454493.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M0M92_RS00055 (M0M92_00055) ilvL 9023..9121 (+) 99 WP_001311244.1 ilv operon leader peptide -
  M0M92_RS00060 (M0M92_00060) ilvG 9262..10908 (+) 1647 WP_049013138.1 acetolactate synthase 2 catalytic subunit -
  M0M92_RS00065 (M0M92_00065) ilvM 10905..11162 (+) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  M0M92_RS00070 (M0M92_00070) ilvE 11179..12108 (+) 930 WP_002883171.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55155.54 Da        Isoelectric Point: 8.4902

>NTDB_id=680741 M0M92_RS00050 WP_032454493.1 7148..8668(-) (comM) [Klebsiella quasipneumoniae strain KP20-558]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNHYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSADNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPIVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=680741 M0M92_RS00050 WP_032454493.1 7148..8668(-) (comM) [Klebsiella quasipneumoniae strain KP20-558]
ATGTCGCTCGCCATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGCCTGACTATGGTCGGACTGCCGGAGACGACCGTGAAAGAGGCCCGTGACCGGGTCCGTAGCGCCCTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCGCCAGCGGATCTGCCTAAAGAGGGCGGACGA
TACGATCTGCCTATCGCTCTCGCGCTTCTCGTCGCCTCAGAGCAGCTCAATACGACGCGACTGAATCACTATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGTATCGTCGTCTCCGCTGATAATGCGGCTGAGGTCGGCCTGATTGGCGGCAGCGATTGCCTCGTCGCCGACCATCTG
CAGGAGGTATGCGCTTTTCTCGCGGGGCAGACATCGCTTTCACCGCCTCTTGCCGAGGCACCTATTGTTGATGAACGCGG
CGAAGATTTGCGCGATGTTATCGGCCAGCAGCAGGGAAAACGAGCGCTGGAGATTGTGGCCGCCGGGGGTCACAACCTGC
TCCTGATAGGCCCGCCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCACTGGAGAGCACCGCCATTCAGAGCCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCGCCTCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGTTCAATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCTGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCGGCGATGAACCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCGCCGCCAGGGATACTGAGCCAGGGCACACAGGGCGAA
GAGTCTAGCGCAACGGTCAGGCAGCGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGGCAAAATAAGCTCAATGCTCA
TCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGT
TGGGGCTCTCTATTCGAGCCTGGCAGCGTCTGTTAAAGGTGGCGAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.274

100

0.609
  comM Glaesserella parasuis strain SC1401

59.921

100

0.603
  comM Vibrio cholerae strain A1552

59.841

99.407

0.595
  comM Vibrio campbellii strain DS40M4

59.722

99.605

0.595
  comM Legionella pneumophila str. Paris

49.899

98.221

0.49
  comM Legionella pneumophila strain ERS1305867

49.899

98.221

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.814

100

0.453