Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M1D30_RS06280 Genome accession   NZ_CP096247
Coordinates   1545003..1546391 (-) Length   462 a.a.
NCBI ID   WP_248507470.1    Uniprot ID   -
Organism   Prevotella sp. E15-22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1540003..1551391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1D30_RS06260 (M1D30_06260) - 1540908..1541735 (+) 828 WP_248507463.1 N-acetylmuramoyl-L-alanine amidase-like domain-containing protein -
  M1D30_RS06265 (M1D30_06265) - 1541752..1542327 (+) 576 WP_248507465.1 L-threonylcarbamoyladenylate synthase -
  M1D30_RS06270 (M1D30_06270) pgk 1542483..1543754 (-) 1272 WP_248507466.1 phosphoglycerate kinase -
  M1D30_RS06275 (M1D30_06275) - 1543801..1544898 (-) 1098 WP_248507468.1 AAA family ATPase -
  M1D30_RS06280 (M1D30_06280) radA 1545003..1546391 (-) 1389 WP_248507470.1 DNA repair protein RadA Machinery gene
  M1D30_RS06285 (M1D30_06285) - 1546497..1547423 (+) 927 WP_248507472.1 ABC transporter substrate-binding protein -
  M1D30_RS06290 (M1D30_06290) - 1547439..1549643 (+) 2205 WP_248507474.1 tetratricopeptide repeat protein -
  M1D30_RS06295 (M1D30_06295) cls 1549687..1550982 (-) 1296 WP_248507476.1 cardiolipin synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50681.18 Da        Isoelectric Point: 6.5041

>NTDB_id=680678 M1D30_RS06280 WP_248507470.1 1545003..1546391(-) (radA) [Prevotella sp. E15-22]
MAKDKTAYVCENCGQESPKWIGKCPACGQWNTFKEIKISADSARQTATSAAASTARSLLSNKAMRLRDINSKDEVRIDMH
DGELNRVLGGGLVPGSIVLLGGEPGIGKSTLLLQTMLSLNEKLILYVSGEESAHQLKMRAERISPSNSHDNFLILCENSL
EKIFEHIKEEKPELVVIDSIQTIATEDVESSAGSLAQVRECAASLLRFAKSSGVPVILIGHITKEGTLAGPKILEHIVDT
VIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQTNGLRQVSNPSELLLTQDHEGLSGIAISSAIEGIRPFLVETQALVS
SAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVFVNIAGGLRVTDLAMDLSVIAAVLSSNVDTPIDNTWCMAGE
VGLSGEVRPINRIEQRIAEAEKLGFQHIIIPRYNLQGIDHHKFNIEIHPVRKVEEALRALFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=680678 M1D30_RS06280 WP_248507470.1 1545003..1546391(-) (radA) [Prevotella sp. E15-22]
ATGGCAAAAGACAAGACAGCATACGTCTGCGAGAATTGTGGACAGGAATCGCCAAAATGGATTGGCAAATGTCCTGCTTG
TGGACAATGGAACACTTTCAAGGAAATCAAAATTTCGGCCGACTCAGCTCGTCAAACTGCCACATCGGCAGCAGCCAGCA
CGGCTCGTTCGCTACTTAGCAACAAGGCTATGCGCCTGCGCGACATTAACAGCAAGGATGAAGTGCGAATTGATATGCAT
GACGGCGAATTGAACCGTGTGCTTGGTGGCGGACTTGTTCCAGGCAGCATTGTACTCTTGGGCGGCGAACCAGGCATTGG
CAAGTCAACACTTCTGTTGCAAACCATGCTGAGTCTTAACGAGAAACTTATTCTCTATGTCAGCGGTGAGGAGAGCGCCC
ACCAACTGAAGATGAGAGCAGAACGTATATCTCCTAGCAACTCACACGATAATTTTCTGATTCTGTGCGAGAACTCACTA
GAGAAAATCTTTGAGCATATCAAGGAAGAGAAGCCCGAACTTGTGGTCATCGACTCGATTCAAACCATCGCCACCGAAGA
TGTAGAGTCATCGGCTGGATCGCTGGCTCAAGTGCGCGAATGTGCGGCTTCGCTACTACGTTTTGCAAAATCTAGTGGCG
TACCCGTCATCCTCATTGGCCACATCACCAAAGAAGGCACGTTAGCGGGGCCAAAGATCTTGGAACACATCGTCGATACG
GTCATTCAGTTTGAAGGTGATCAGCATTATATGTATCGCATTCTGAGAAGCATTAAGAATCGATTTGGAAGTACCAGTGA
ATTAGGTATTTATGAAATGCAGACAAATGGGCTAAGACAGGTGTCAAACCCATCCGAATTACTTCTCACACAAGACCACG
AAGGGCTCTCGGGCATAGCTATCTCCAGTGCCATAGAGGGCATCCGACCATTCTTGGTTGAAACACAAGCATTAGTATCA
TCTGCAGCATATGGCACTCCACAACGTTCTGCCACGGGATTTGACCAAAGACGTTTGAACATGCTTCTAGCAGTATTGGA
GAAACGCGTAGGATTCAAACTGATGCAAAAAGATGTCTTCGTAAATATTGCTGGCGGACTAAGAGTTACCGACCTGGCAA
TGGACCTAAGCGTTATCGCAGCCGTACTATCATCAAATGTTGATACACCAATTGACAACACCTGGTGCATGGCTGGTGAA
GTTGGACTGAGCGGTGAGGTTCGCCCCATCAACCGAATTGAACAACGTATAGCAGAAGCAGAGAAACTGGGATTCCAGCA
CATCATTATCCCACGCTATAATCTTCAAGGTATTGACCACCACAAATTCAACATAGAAATTCATCCAGTACGTAAAGTGG
AAGAGGCCCTAAGAGCATTATTCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(84-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(348-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.032

100

0.494
  radA Streptococcus pneumoniae Rx1

45.238

100

0.452
  radA Streptococcus pneumoniae D39

45.238

100

0.452
  radA Streptococcus pneumoniae R6

45.238

100

0.452
  radA Streptococcus pneumoniae TIGR4

45.238

100

0.452
  radA Streptococcus mitis NCTC 12261

45.238

100

0.452
  radA Streptococcus mitis SK321

45.022

100

0.45