Detailed information NTG0680595

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA34_RS07655
• Genome accession: NZ_CP109849
• Coordinates: 1592508..1593512 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA34
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1587508..1598512

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA34_RS07625 (PALA34_01511)	fghA	1587600..1588451 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA34_RS07630 (PALA34_01512)	ispF	1588522..1588995 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA34_RS07635 (PALA34_01513)	truD	1588992..1590059 (+)	1068	WP_016852567.1	tRNA pseudouridine(13) synthase TruD	-
PALA34_RS07640 (PALA34_01514)	surE	1590047..1590796 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA34_RS07645 (PALA34_01515)	-	1590829..1591464 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA34_RS07650 (PALA34_01516)	-	1591510..1592403 (+)	894	WP_016852568.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA34_RS07655 (PALA34_01517)	rpoS	1592508..1593512 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA34_RS07660 (PALA34_01518)	fdxA	1593939..1594262 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PALA34_RS07665 (PALA34_01519)	mutS	1594329..1596896 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA34_RS07670 (PALA34_01520)	-	1597022..1598029 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=680595 PALA34_RS07655 WP_003113871.1 1592508..1593512(+) (rpoS) [Pseudomonas aeruginosa strain PALA34]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=680595 PALA34_RS07655 WP_003113871.1 1592508..1593512(+) (rpoS) [Pseudomonas aeruginosa strain PALA34]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653