Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MZK46_RS10445 Genome accession   NZ_CP096209
Coordinates   1949260..1950984 (-) Length   574 a.a.
NCBI ID   WP_318538971.1    Uniprot ID   -
Organism   Terribacillus saccharophilus strain ZY-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1944260..1955984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZK46_RS10430 - 1945603..1946535 (-) 933 WP_318538969.1 DMT family transporter -
  MZK46_RS10435 spo0A 1946809..1947594 (-) 786 WP_038561165.1 sporulation transcription factor Spo0A -
  MZK46_RS10440 spoIVB 1947836..1949101 (-) 1266 WP_318538970.1 SpoIVB peptidase -
  MZK46_RS10445 recN 1949260..1950984 (-) 1725 WP_318538971.1 DNA repair protein RecN Machinery gene
  MZK46_RS10450 ahrC 1951009..1951458 (-) 450 WP_038561172.1 transcriptional regulator AhrC/ArgR -
  MZK46_RS10455 - 1951451..1952308 (-) 858 WP_318538972.1 TlyA family RNA methyltransferase -
  MZK46_RS10460 dxs 1952313..1954208 (-) 1896 WP_318538973.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MZK46_RS10465 - 1954498..1955340 (-) 843 WP_404819840.1 polyprenyl synthetase family protein -
  MZK46_RS10470 - 1955379..1955612 (-) 234 WP_038561183.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64787.11 Da        Isoelectric Point: 4.8121

>NTDB_id=680451 MZK46_RS10445 WP_318538971.1 1949260..1950984(-) (recN) [Terribacillus saccharophilus strain ZY-1]
MLTELSIKDFAIIDQIRIHFKEGLTVLTGETGAGKSIVIDAVQLLSGGRGSVEFIRHGQKKAELEGLFIIDSPDHPIYAI
GAQFGVDIDDGMVVLERTMTTSGKSICRVNGKLVTLAILREFGKSLIDIHTQHETQSLMDADKHIELLDLYDAEAIGKAR
EAYTLQFKELQKLKKRYKEWNTNEQEMAQRLDLLKFQYNELKEAELQPGEDEQLTEERTKLMNYERIYQSLHDAYNALYG
EQKGLDWVGHALASLESASSYDDDIQKHHQMISEQYYLMEDLTFQLSSQLDSLSYNPERLNEIEMRLNEISRLKKKYGQS
VEEILEYAASIEDQIDQIQNRDSHIHQLEQQIEDLGEDAMLEAKQLHDLRVQAAVQLTDAIHEELKDLYLEKARFHVDVQ
LKNGNSGDPELNGKPVQLTTDGFDAITFHISTNPGEPLKELHKVASGGELSRIMLALKRIFSRHQGVTSVIFDEVDTGVS
GRVAQAIGEKIYGISVGSQVLCITHLPQVASMADTHLLIEKHVENNSTHTSVTELGQDTAVEEISRMMTGTVLTEKTKEH
ARELITLAGQYKQS

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=680451 MZK46_RS10445 WP_318538971.1 1949260..1950984(-) (recN) [Terribacillus saccharophilus strain ZY-1]
ATGCTTACAGAACTTTCGATTAAGGATTTTGCAATTATTGATCAAATACGGATACATTTTAAAGAAGGGCTTACTGTGCT
GACTGGAGAAACGGGAGCAGGTAAGTCTATTGTCATTGATGCAGTGCAGCTGCTTAGCGGCGGAAGAGGGTCGGTTGAAT
TCATCCGCCACGGTCAGAAAAAAGCCGAGCTGGAAGGCCTTTTTATCATTGACTCACCTGATCACCCTATTTATGCTATT
GGTGCTCAATTTGGTGTGGATATTGATGATGGAATGGTTGTGCTGGAGCGTACCATGACGACAAGCGGAAAAAGTATTTG
TCGTGTAAATGGCAAGCTGGTGACTTTGGCTATATTACGGGAATTCGGCAAATCATTGATCGATATTCATACGCAGCACG
AAACCCAATCTTTGATGGATGCAGATAAGCATATAGAGCTTTTGGATTTGTATGATGCAGAAGCGATCGGTAAAGCAAGG
GAAGCCTATACGCTTCAATTCAAAGAACTTCAAAAATTGAAAAAACGCTACAAAGAATGGAATACCAATGAACAGGAAAT
GGCCCAGCGTCTTGACTTGCTTAAATTTCAATACAACGAATTGAAAGAAGCGGAACTCCAGCCTGGTGAAGACGAACAGC
TTACAGAAGAGCGTACAAAGCTGATGAATTATGAACGAATTTATCAATCGCTTCATGATGCGTATAACGCACTTTACGGT
GAGCAAAAAGGTTTGGACTGGGTAGGGCATGCTTTGGCTAGTCTTGAATCGGCTAGTTCCTATGATGATGATATACAGAA
GCACCATCAGATGATCAGTGAACAATATTATCTGATGGAGGATCTCACATTCCAGCTGAGCAGTCAGCTTGATTCGCTTT
CTTATAATCCAGAACGCTTGAACGAAATTGAAATGCGCTTGAATGAAATAAGCCGGTTGAAAAAGAAGTATGGCCAATCA
GTCGAAGAAATTTTAGAATATGCAGCGAGTATTGAAGATCAGATCGATCAGATTCAGAATCGGGACTCCCACATTCATCA
GTTGGAGCAGCAGATAGAGGATCTTGGAGAAGACGCAATGCTTGAAGCAAAGCAGCTTCATGACCTCCGTGTTCAAGCGG
CTGTCCAGTTAACAGATGCTATTCATGAGGAACTGAAGGATCTGTATTTGGAAAAAGCTCGTTTTCATGTTGATGTACAG
TTAAAGAATGGGAATTCTGGTGATCCAGAATTGAATGGTAAGCCTGTCCAGTTGACCACAGACGGTTTTGACGCGATTAC
ATTCCATATCTCTACAAATCCTGGTGAGCCTTTGAAGGAACTGCACAAAGTCGCTTCAGGAGGGGAATTATCTCGTATCA
TGCTTGCACTGAAGCGTATTTTCTCAAGGCATCAAGGAGTGACAAGTGTCATTTTTGATGAAGTGGATACAGGAGTGAGT
GGCCGTGTCGCCCAGGCGATAGGAGAAAAGATATATGGTATCTCTGTTGGCTCGCAGGTATTGTGTATTACCCATTTGCC
ACAGGTAGCCTCAATGGCGGATACGCATTTATTAATTGAAAAGCATGTTGAAAACAACAGTACGCATACGTCTGTGACTG
AACTTGGTCAAGACACTGCTGTCGAAGAAATCAGCAGAATGATGACTGGAACAGTGCTCACTGAAAAGACGAAAGAGCAT
GCAAGAGAACTGATAACTCTTGCTGGACAATACAAACAATCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.861

100

0.551