Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MZK46_RS00655 Genome accession   NZ_CP096209
Coordinates   121427..122797 (+) Length   456 a.a.
NCBI ID   WP_318539994.1    Uniprot ID   -
Organism   Terribacillus saccharophilus strain ZY-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 116427..127797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZK46_RS00635 - 116750..117208 (+) 459 WP_093881642.1 CtsR family transcriptional regulator -
  MZK46_RS00640 - 117229..117771 (+) 543 WP_318539992.1 UvrB/UvrC motif-containing protein -
  MZK46_RS00645 - 117771..118838 (+) 1068 WP_102706259.1 protein arginine kinase -
  MZK46_RS00650 clpC 118859..121288 (+) 2430 WP_318539993.1 ATP-dependent protease ATP-binding subunit ClpC -
  MZK46_RS00655 radA 121427..122797 (+) 1371 WP_318539994.1 DNA repair protein RadA Machinery gene
  MZK46_RS00660 - 122970..124079 (+) 1110 WP_038565101.1 PIN/TRAM domain-containing protein -
  MZK46_RS00665 ispD 124172..124849 (+) 678 WP_318539995.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MZK46_RS00670 ispF 124864..125340 (+) 477 WP_318539996.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MZK46_RS00675 gltX 125365..126834 (+) 1470 WP_318539997.1 glutamate--tRNA ligase -
  MZK46_RS00680 cysE 127099..127785 (+) 687 WP_318539998.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49855.20 Da        Isoelectric Point: 7.1423

>NTDB_id=680436 MZK46_RS00655 WP_318539994.1 121427..122797(+) (radA) [Terribacillus saccharophilus strain ZY-1]
MAKRKTKYVCQECGYESAKWMGKCPSCNNWNTFTEEVVTPASALPSFKYNNNSAKPQSITAIHSEKEPRVTTDLPEFNRV
LGGGIVAGSLVLIGGDPGIGKSTLLLQVSAQLAEKELPVLYISGEESARQTKLRADRLGVKADQLYVLSETNLQDITRHI
EEVKPAFVVVDSIQTVYREEVTSAPGSVTQVRECTSELMRVAKTNGIPIFLVGHVTKEGAIAGPRMLEHMVDAVLYFEGE
RHHTFRILRSVKNRFGSTNEMGIFEMKEEGLREVTNPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPTSFGNP
RRMATGTDHNRVPLLMAVLEKRVGLMLQNQDAYVKIAGGMRLDEPAIDLAVAASIASSFKDKPTKPDDVLIGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRAIVPKKNLDGWTVPSSIKVVGVNSVSEALHIVLGED

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=680436 MZK46_RS00655 WP_318539994.1 121427..122797(+) (radA) [Terribacillus saccharophilus strain ZY-1]
TTGGCAAAAAGAAAGACAAAGTATGTATGTCAGGAATGCGGATATGAATCCGCCAAGTGGATGGGCAAATGCCCGAGCTG
CAATAATTGGAATACCTTTACGGAAGAAGTTGTTACACCGGCTAGCGCCCTTCCGTCATTCAAATACAACAACAACAGCG
CAAAGCCTCAGTCGATTACAGCTATTCACTCCGAAAAGGAACCAAGAGTAACAACGGATCTCCCGGAGTTCAACAGGGTG
CTCGGCGGCGGAATCGTAGCAGGATCGCTTGTGCTTATCGGGGGTGACCCTGGTATCGGTAAATCTACCTTGCTTTTGCA
AGTCAGTGCACAGCTGGCAGAGAAGGAACTGCCGGTTCTATATATTTCCGGAGAGGAATCAGCCCGTCAGACGAAACTCC
GAGCAGATCGTCTCGGTGTAAAGGCAGATCAGCTCTATGTGTTATCAGAGACAAATCTGCAGGACATCACACGGCATATT
GAAGAAGTGAAGCCGGCGTTTGTTGTAGTCGATTCCATTCAGACCGTGTATCGGGAAGAAGTCACCAGCGCACCAGGAAG
TGTTACGCAGGTACGGGAATGTACAAGTGAGCTGATGCGGGTTGCCAAGACAAATGGCATTCCGATTTTCCTCGTTGGTC
ATGTAACGAAAGAAGGCGCCATCGCCGGTCCTAGAATGCTTGAACATATGGTGGATGCGGTTCTTTATTTCGAAGGGGAA
CGTCATCATACATTCCGAATCTTGCGAAGTGTAAAGAACCGGTTTGGAAGTACGAATGAAATGGGTATCTTCGAGATGAA
GGAAGAAGGATTAAGGGAAGTGACGAATCCGTCTGAAATCTTCCTGGAGGAAAGATCGCAGGGGGCGGCTGGATCTACAG
TTGTAGCGTCGATGGAAGGGACACGCCCAGTTCTTGTCGAGATTCAGGCACTTATCTCTCCGACAAGCTTCGGAAACCCA
CGCCGTATGGCTACCGGTACAGATCATAACCGGGTGCCGCTTTTAATGGCGGTGCTTGAGAAACGGGTTGGACTTATGCT
GCAGAATCAAGATGCATACGTCAAGATTGCCGGCGGTATGCGATTGGACGAGCCTGCAATCGATTTGGCGGTAGCTGCCA
GTATCGCATCCAGCTTTAAGGACAAGCCGACCAAGCCAGATGATGTCTTGATCGGGGAAGTGGGTCTGACAGGTGAAGTG
AGACGCGTATCCAGGATTGAACAGCGTGTCCAAGAAGCGGCTAAGCTCGGCTTCAAGCGGGCAATCGTACCGAAGAAAAA
TTTGGATGGCTGGACGGTCCCGTCAAGTATTAAAGTAGTTGGAGTCAACTCTGTTAGTGAAGCACTTCATATTGTTTTGG
GAGAGGATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-219)

Subunit ChlI of Mg-chelatase (ChlI)

(356-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.304

100

0.735
  radA Streptococcus pneumoniae Rx1

60.927

99.342

0.605
  radA Streptococcus pneumoniae D39

60.927

99.342

0.605
  radA Streptococcus pneumoniae R6

60.927

99.342

0.605
  radA Streptococcus pneumoniae TIGR4

60.927

99.342

0.605
  radA Streptococcus mitis NCTC 12261

60.927

99.342

0.605
  radA Streptococcus mitis SK321

60.927

99.342

0.605