Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   M0M42_RS17245 Genome accession   NZ_CP096208
Coordinates   3687455..3689047 (+) Length   530 a.a.
NCBI ID   WP_248493574.1    Uniprot ID   -
Organism   Pseudomonas knackmussii strain B09-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3682455..3694047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M42_RS17225 (M0M42_17225) pgeF 3684154..3684891 (-) 738 WP_248493568.1 peptidoglycan editing factor PgeF -
  M0M42_RS17230 (M0M42_17230) rluD 3684888..3685862 (-) 975 WP_222909447.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  M0M42_RS17235 (M0M42_17235) - 3686166..3687173 (+) 1008 WP_248493570.1 outer membrane protein assembly factor BamD -
  M0M42_RS17240 (M0M42_17240) - 3687232..3687465 (+) 234 WP_248493572.1 PP0621 family protein -
  M0M42_RS17245 (M0M42_17245) pilS 3687455..3689047 (+) 1593 WP_248493574.1 ATP-binding protein Regulator
  M0M42_RS17250 (M0M42_17250) pilR 3689160..3690497 (+) 1338 WP_248493576.1 sigma-54 dependent transcriptional regulator Regulator
  M0M42_RS17255 (M0M42_17255) - 3690532..3691587 (-) 1056 WP_248493578.1 DUF2333 family protein -
  M0M42_RS17260 (M0M42_17260) - 3691808..3693421 (+) 1614 WP_248493580.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59123.31 Da        Isoelectric Point: 8.1820

>NTDB_id=680425 M0M42_RS17245 WP_248493574.1 3687455..3689047(+) (pilS) [Pseudomonas knackmussii strain B09-2]
MVTEHLTFLGQQGRRILRLYHLYRVAIGLVLVLLISSDLHSDLMRMINPGAFHFGAWLYLILNILIAVLLQNPKRELPVL
ALALLDVTQLAALFYFAGGTPSGIGNLLIVAVAIANILLHGRVGFFIAAVAAAGLIYLTFYLSLNDSAASSQYVQAAALG
TLCFAAALLVQGLTRRLQVSETLARQRAEEVANLEALNAQILQRMRTGILVLDSQERVLLANQGALELLGQQELTGERLA
PRCPDLIKGLQQWRDNPTLRPRNFKATAEGATLQPSFATLQHGVKQDTLVFLEDISHIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEMLDAADLRLTQIIQDHSRRMNLVIENILQLSRRRQAEPQLLDLKYWVHRFASEFRETLPAD
QQVHVETRGSSLQTRMDPNQLIQVLTNLVQNGLRYSGHKRKQSQVWLKLFRDESSDLPVLEVLDDGPGVPAEQVQNIFEP
FFTTENKGTGLGLYISRELCESNQARLDYRERDEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=680425 M0M42_RS17245 WP_248493574.1 3687455..3689047(+) (pilS) [Pseudomonas knackmussii strain B09-2]
GTGGTAACTGAGCACCTGACGTTCCTAGGCCAGCAGGGCCGACGGATCCTTCGCCTCTATCATCTTTATCGCGTCGCGAT
TGGTCTCGTGCTGGTCCTGCTCATCAGCAGCGATCTACACAGCGACCTGATGCGTATGATCAACCCAGGCGCGTTTCACT
TCGGCGCCTGGCTCTACCTGATTCTCAACATCCTCATCGCCGTGCTGCTGCAGAACCCGAAACGGGAACTGCCTGTTCTG
GCGCTCGCCCTGTTAGACGTGACCCAACTCGCGGCGCTGTTCTACTTTGCCGGCGGGACACCCAGCGGCATTGGCAACCT
GCTGATTGTCGCGGTCGCCATCGCGAATATCCTGCTGCACGGCCGCGTTGGTTTTTTTATTGCGGCAGTTGCCGCAGCCG
GCCTCATCTACCTGACCTTTTATTTAAGTCTCAACGATAGCGCTGCGAGCAGCCAGTATGTTCAGGCTGCCGCACTGGGC
ACGCTGTGTTTTGCAGCGGCGCTGCTGGTACAAGGGTTGACCCGACGCCTGCAGGTCAGCGAAACCCTCGCCCGGCAGCG
CGCCGAGGAAGTCGCCAATCTCGAAGCGCTGAACGCGCAAATCCTGCAACGCATGCGCACCGGGATCCTCGTGCTCGATT
CTCAGGAGCGCGTACTGCTGGCCAACCAGGGCGCACTCGAATTGCTCGGGCAGCAGGAATTGACGGGCGAACGCCTCGCA
CCGCGCTGTCCCGATCTGATCAAAGGCTTACAGCAGTGGCGTGACAATCCGACGCTGCGGCCTCGCAACTTCAAGGCAAC
CGCCGAAGGCGCCACACTTCAGCCAAGCTTCGCCACTCTGCAACACGGCGTAAAGCAGGACACATTGGTCTTTCTCGAAG
ACATCTCACACATCGCGCAGAAGGCGCAGCAGCTCAAGCTCGCCTCACTGGGCCGCTTGACTGCGAGCATCGCCCACGAG
ATCCGCAATCCGCTCGGCGCGATCAGCCATGCCGCTCAGCTGCTGCAGGAGTCGGAGATGCTCGACGCAGCGGATCTACG
ACTCACGCAGATCATCCAGGATCATTCGCGACGAATGAACCTCGTGATCGAGAATATCCTTCAGCTGTCGCGCCGTCGCC
AAGCGGAGCCGCAGCTCCTAGATCTGAAATACTGGGTACATCGGTTCGCCAGCGAATTTCGCGAAACGTTGCCAGCCGAC
CAACAGGTGCATGTGGAGACCCGTGGCAGTTCACTGCAAACCCGCATGGACCCGAATCAGCTGATCCAGGTCCTGACTAA
CCTGGTGCAGAATGGACTGCGCTACAGCGGCCACAAGCGCAAGCAGTCGCAGGTATGGCTCAAGTTGTTCCGTGACGAAA
GCAGTGACCTGCCGGTGCTTGAAGTGCTTGATGACGGACCGGGCGTGCCGGCTGAGCAGGTTCAGAATATCTTCGAGCCA
TTTTTCACGACGGAAAACAAGGGCACCGGACTGGGGCTCTATATTTCCCGGGAGTTGTGTGAAAGCAATCAGGCTCGTCT
GGACTATCGTGAACGAGACGAGGGCGGTAGCTGCTTTCGTATCGTCTTCGCGCATCCGCGCAAGCTGAGCTAA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(201-249)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.528

100

0.645