Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M0M42_RS03195 Genome accession   NZ_CP096208
Coordinates   668859..670220 (-) Length   453 a.a.
NCBI ID   WP_073301146.1    Uniprot ID   -
Organism   Pseudomonas knackmussii strain B09-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 663859..675220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M42_RS03170 (M0M42_03170) glyA 664106..665359 (+) 1254 WP_222910709.1 serine hydroxymethyltransferase -
  M0M42_RS03175 (M0M42_03175) - 665523..666874 (+) 1352 Protein_622 cache domain-containing protein -
  M0M42_RS03180 (M0M42_03180) - 667078..667716 (+) 639 WP_248495135.1 response regulator transcription factor -
  M0M42_RS03185 (M0M42_03185) - 667834..668295 (+) 462 WP_248495137.1 isoprenylcysteine carboxylmethyltransferase family protein -
  M0M42_RS03190 (M0M42_03190) - 668355..668735 (+) 381 WP_222910713.1 PilZ domain-containing protein -
  M0M42_RS03195 (M0M42_03195) radA 668859..670220 (-) 1362 WP_073301146.1 DNA repair protein RadA Machinery gene
  M0M42_RS03200 (M0M42_03200) - 670337..670771 (+) 435 WP_248495139.1 CopD family protein -
  M0M42_RS03205 (M0M42_03205) - 670954..671223 (-) 270 WP_222910716.1 DUF465 domain-containing protein -
  M0M42_RS03210 (M0M42_03210) mscL 671433..671843 (+) 411 WP_248495141.1 large-conductance mechanosensitive channel protein MscL -
  M0M42_RS03215 (M0M42_03215) - 671896..673926 (-) 2031 WP_248495143.1 VWA domain-containing protein -
  M0M42_RS03220 (M0M42_03220) - 673926..674735 (-) 810 WP_248495145.1 CbbQ/NirQ/NorQ/GpvN family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48514.04 Da        Isoelectric Point: 6.7491

>NTDB_id=680408 M0M42_RS03195 WP_073301146.1 668859..670220(-) (radA) [Pseudomonas knackmussii strain B09-2]
MAKAKRMYGCTECGSTFPKWAGQCGDCGAWNTLVETIIDGAAPPSGRAGWAGEKANIKTLAEVSVEEVPRFSTASGELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIARQFPALYVTGEESQQQVAMRARRLDLPQDQLKVMTETCIESIIATA
RLEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAINELGVFGMTDKGLKEVTNPSAIFLTRAQEAVPGSVVMATWEGTRPMLVEVQALVDTSHMANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFINVVGGVKVLETASDLALMAAVISSLRNRPLDTDLLVFGEVGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=680408 M0M42_RS03195 WP_073301146.1 668859..670220(-) (radA) [Pseudomonas knackmussii strain B09-2]
ATGGCCAAGGCCAAGCGCATGTATGGCTGCACCGAATGCGGCTCGACCTTCCCCAAGTGGGCTGGCCAATGCGGCGATTG
TGGTGCCTGGAATACCCTGGTGGAAACCATCATCGACGGCGCAGCTCCGCCGAGCGGCCGCGCGGGCTGGGCCGGCGAGA
AAGCCAACATCAAGACCCTCGCCGAGGTCAGCGTTGAAGAAGTGCCACGTTTTTCGACCGCTTCCGGCGAGCTGGATCGC
GTACTCGGCGGCGGACTGGTCGACGGCTCCGTGGTGCTGATCGGCGGTGATCCCGGCATCGGCAAGTCAACCATCCTGCT
GCAGACGTTGTGCAACATTGCCCGACAGTTTCCCGCGCTCTACGTGACCGGCGAGGAATCGCAGCAGCAGGTGGCCATGC
GTGCACGCCGCCTGGACCTGCCGCAGGACCAGCTCAAGGTGATGACCGAGACCTGCATCGAATCAATCATTGCCACTGCA
CGACTGGAAAAGCCCAAGGTGATGGTCATCGACTCGATCCAGACCATCTTCACCGAGCAGCTGCAGTCAGCGCCCGGCGG
CGTCGCCCAGGTACGGGAAAGCGCGGCGCTGCTGGTGCGCTACGCCAAGCAGAGTGGCACGGCGATCTTCCTCGTCGGTC
ACGTGACCAAGGAGGGCGCACTGGCGGGGCCGAGGGTGCTGGAACATATGGTCGACACGGTGCTGTACTTCGAAGGCGAA
TCGGACGGTCGCTTGCGGCTGCTGCGCGCCGTGAAGAACCGCTTCGGTGCGATCAACGAGCTGGGCGTGTTCGGCATGAC
GGACAAGGGTCTGAAGGAAGTCACCAACCCTTCTGCGATCTTCCTTACGCGTGCGCAGGAAGCGGTGCCTGGCAGCGTGG
TCATGGCCACCTGGGAAGGCACCCGACCGATGCTGGTCGAGGTGCAGGCGCTGGTCGACACCAGCCACATGGCCAATCCG
CGGCGCGTCACCCTGGGACTCGATCAGAACCGCCTGGCCATGCTGCTGGCCGTTCTGCATCGCCACGGCGGTATTCCCAC
CTACGACCAGGACGTGTTTATCAACGTGGTAGGTGGCGTGAAGGTGCTGGAGACGGCATCGGATCTGGCGCTGATGGCGG
CGGTGATTTCCAGTCTGCGCAATCGCCCGCTGGATACCGATCTGTTGGTGTTTGGTGAGGTTGGTCTTTCCGGCGAGATC
CGTCCGGTGCCGAGCGGCCAGGAGCGACTGAAGGAAGCAGCCAAACACGGCTTCAAACGCGCCATCGTGCCCAAGGGCAA
CGCGCCGAAAGAAGCACCCGCCGGGCTGCAGATCATCGCGGTAACACGACTTGAGCAGGCGCTGGACGCATTGTTCGAAT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.124

100

0.481
  radA Streptococcus pneumoniae Rx1

46.608

100

0.47
  radA Streptococcus pneumoniae D39

46.608

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.608

100

0.47
  radA Streptococcus pneumoniae R6

46.608

100

0.47
  radA Streptococcus mitis NCTC 12261

46.389

100

0.468
  radA Streptococcus mitis SK321

46.578

100

0.466