Detailed information NTG0680386

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA32_RS07405
• Genome accession: NZ_CP109844
• Coordinates: 1540985..1541989 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA32
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1535985..1546989

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA32_RS07375 (PALA32_01455)	fghA	1536077..1536928 (+)	852	WP_003098562.1	S-formylglutathione hydrolase	-
PALA32_RS07380 (PALA32_01456)	ispF	1536999..1537472 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA32_RS07385 (PALA32_01457)	truD	1537469..1538536 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PALA32_RS07390 (PALA32_01458)	surE	1538524..1539273 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA32_RS07395 (PALA32_01459)	-	1539306..1539941 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA32_RS07400 (PALA32_01460)	-	1539987..1540880 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA32_RS07405 (PALA32_01461)	rpoS	1540985..1541989 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA32_RS07410 (PALA32_01462)	fdxA	1542416..1542739 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA32_RS07415 (PALA32_01463)	mutS	1542806..1545373 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA32_RS07420 (PALA32_01464)	-	1545499..1546506 (-)	1008	WP_023085983.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=680386 PALA32_RS07405 WP_003113871.1 1540985..1541989(+) (rpoS) [Pseudomonas aeruginosa strain PALA32]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=680386 PALA32_RS07405 WP_003113871.1 1540985..1541989(+) (rpoS) [Pseudomonas aeruginosa strain PALA32]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653