Detailed information NTG0680368

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M0D10_RS00270
• Genome accession: NZ_CP096207
• Coordinates: 44786..45658 (-)
• Length: 290 a.a.
• NCBI ID: WP_003107301.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa TBCF10839
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 39786..50658

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0D10_RS00225 (M0D10_00220)	-	40647..40817 (-)	171	WP_003094672.1	DUF3094 family protein	-
M0D10_RS00230 (M0D10_00225)	-	40843..41292 (-)	450	WP_021264127.1	MOSC domain-containing protein	-
M0D10_RS00235 (M0D10_00230)	-	41289..41918 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
M0D10_RS00240 (M0D10_00235)	-	42051..42476 (+)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
M0D10_RS00245 (M0D10_00240)	-	42473..42943 (+)	471	WP_003094664.1	hypothetical protein	-
M0D10_RS00250 (M0D10_00245)	-	42940..43629 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
M0D10_RS00255 (M0D10_00250)	-	43735..43944 (+)	210	WP_003094660.1	hypothetical protein	-
M0D10_RS00260 (M0D10_00255)	yacG	43981..44181 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
M0D10_RS00265 (M0D10_00260)	coaE	44178..44789 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
M0D10_RS00270 (M0D10_00265)	pilD	44786..45658 (-)	873	WP_003107301.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
M0D10_RS00275 (M0D10_00270)	pilC	45659..46876 (-)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
M0D10_RS00280 (M0D10_00275)	pilB	46880..48580 (-)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M0D10_RS00285 (M0D10_00280)	-	48811..49275 (+)	465	WP_023129290.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=680368 M0D10_RS00270 WP_003107301.1 44786..45658(-) (pilD) [Pseudomonas aeruginosa TBCF10839]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=680368 M0D10_RS00270 WP_003107301.1 44786..45658(-) (pilD) [Pseudomonas aeruginosa TBCF10839]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
TTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469