Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   M0R79_RS06400 Genome accession   NZ_CP096206
Coordinates   1353102..1353794 (+) Length   230 a.a.
NCBI ID   WP_092570492.1    Uniprot ID   -
Organism   Ignavigranum ruoffiae strain CPL 242382-20     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1348102..1358794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0R79_RS06380 (M0R79_05995) - 1349516..1350322 (+) 807 WP_092570483.1 DUF6612 family protein -
  M0R79_RS06385 (M0R79_05990) - 1350570..1351304 (-) 735 WP_092570485.1 ABC transporter permease -
  M0R79_RS06390 (M0R79_05985) - 1351306..1352046 (-) 741 WP_092570487.1 hypothetical protein -
  M0R79_RS06395 (M0R79_05980) - 1352043..1352963 (-) 921 WP_092570490.1 ABC transporter ATP-binding protein -
  M0R79_RS06400 (M0R79_05975) scnR 1353102..1353794 (+) 693 WP_092570492.1 response regulator transcription factor Regulator
  M0R79_RS06405 (M0R79_05970) - 1353798..1355123 (+) 1326 WP_248415953.1 sensor histidine kinase KdpD -
  M0R79_RS06410 (M0R79_05965) - 1355189..1355590 (+) 402 WP_092570496.1 hypothetical protein -
  M0R79_RS06415 (M0R79_05960) rpmF 1355606..1355785 (+) 180 WP_092570498.1 50S ribosomal protein L32 -
  M0R79_RS06420 (M0R79_05955) - 1356003..1356947 (-) 945 WP_259561195.1 nitronate monooxygenase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26944.10 Da        Isoelectric Point: 8.2898

>NTDB_id=680358 M0R79_RS06400 WP_092570492.1 1353102..1353794(+) (scnR) [Ignavigranum ruoffiae strain CPL 242382-20]
MNYYQRRLLLVEDHQEIAQFIRQSLIQAGFQSINWKADFQSALLALDQEAFDLAILDIMLPDGNGYDLLQYIRQSSRMPV
LFLSAVSDIEQQYKGFELGADDYIVKPFKTRDLVLRIRSLLKRAYPEARNWIQIGNRRVDFSRAIIIHQQEEIPLTAKEY
AILKVLADQPNRIVSFDQIMIQVWGHAYEGYQNSLMAHIHKIRQKIENNPTEPKYLLTMKGLGYKLNLER

Nucleotide


Download         Length: 693 bp        

>NTDB_id=680358 M0R79_RS06400 WP_092570492.1 1353102..1353794(+) (scnR) [Ignavigranum ruoffiae strain CPL 242382-20]
GTGAACTATTATCAACGCCGTCTATTATTGGTCGAGGATCACCAAGAGATTGCTCAATTTATTCGTCAAAGTTTAATACA
AGCCGGTTTCCAATCGATTAATTGGAAAGCAGATTTCCAATCCGCCCTTCTAGCACTGGACCAAGAGGCTTTCGATTTAG
CCATACTAGATATCATGCTTCCTGATGGAAATGGCTATGACCTTCTACAATATATTCGTCAAAGTTCGCGTATGCCCGTC
CTCTTCTTATCGGCCGTATCAGATATTGAACAACAATATAAAGGCTTTGAATTAGGTGCTGACGATTATATTGTCAAACC
CTTTAAGACACGTGACTTGGTTCTGCGGATTCGTTCCTTGCTTAAACGAGCCTATCCAGAAGCCAGAAATTGGATTCAAA
TTGGCAACCGCAGAGTTGACTTTAGTCGGGCAATCATTATTCATCAACAAGAAGAAATTCCTTTAACCGCCAAAGAATAT
GCTATTCTTAAGGTATTAGCGGACCAACCTAACCGGATAGTAAGCTTTGACCAAATAATGATACAAGTCTGGGGGCATGC
CTATGAGGGCTATCAGAATAGCTTGATGGCTCATATCCATAAAATTCGCCAAAAAATCGAAAATAACCCCACTGAACCTA
AGTATCTATTGACAATGAAAGGCTTAGGCTACAAATTAAATTTGGAGCGATAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-226)

Response regulator receiver domain (Response_reg)

(9-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

56.579

99.13

0.561