Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M0M57_RS05185 Genome accession   NZ_CP096205
Coordinates   1162243..1163604 (+) Length   453 a.a.
NCBI ID   WP_248436012.1    Uniprot ID   -
Organism   Flavobacterium azooxidireducens strain IGB 4-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1157243..1168604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0M57_RS05160 (M0M57_05160) - 1157937..1158743 (-) 807 WP_248436002.1 glycogen/starch synthase -
  M0M57_RS05165 (M0M57_05165) panC 1158851..1159699 (+) 849 WP_248436004.1 pantoate--beta-alanine ligase -
  M0M57_RS05170 (M0M57_05170) panD 1159713..1160063 (+) 351 WP_248436006.1 aspartate 1-decarboxylase -
  M0M57_RS05175 (M0M57_05175) - 1160070..1161032 (+) 963 WP_248436008.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  M0M57_RS05180 (M0M57_05180) - 1161094..1162242 (+) 1149 WP_248436010.1 alpha/beta hydrolase -
  M0M57_RS05185 (M0M57_05185) radA 1162243..1163604 (+) 1362 WP_248436012.1 DNA repair protein RadA Machinery gene
  M0M57_RS05190 (M0M57_05190) - 1163615..1164127 (+) 513 WP_248436014.1 hypothetical protein -
  M0M57_RS05195 (M0M57_05195) - 1164120..1164875 (-) 756 WP_248436016.1 LytTR family DNA-binding domain-containing protein -
  M0M57_RS05200 (M0M57_05200) - 1164872..1166671 (-) 1800 WP_248436017.1 histidine kinase -
  M0M57_RS05205 (M0M57_05205) - 1167057..1168397 (+) 1341 WP_248436019.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49847.26 Da        Isoelectric Point: 5.5769

>NTDB_id=680337 M0M57_RS05185 WP_248436012.1 1162243..1163604(+) (radA) [Flavobacterium azooxidireducens strain IGB 4-14]
MAKVKTSFFCQNCGTQYSKWQGQCHACNEWNTIVEEVIQKEEKSSWKPSSTETKKAPKPLRISDIDSTQEIRLDTTDGEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPNGDNCFILTETKTQNIFKQI
QEIDPEIVIIDSIQTLHTDYIESTAGSISQIRECTAELIKFAKETNVPVLLIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAEIGIYEMQGSGLREVANPSEILISHKDEELSGTAIASTLEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVGKDFCFAGEVGLAGEI
RPVNRVEQRILEAEKLGFSTIFVSKYNKISLKETLIQVKLVAKIEDVVSELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=680337 M0M57_RS05185 WP_248436012.1 1162243..1163604(+) (radA) [Flavobacterium azooxidireducens strain IGB 4-14]
ATGGCAAAAGTAAAAACCTCCTTTTTTTGTCAAAATTGTGGGACGCAATATTCCAAATGGCAAGGACAATGTCATGCTTG
CAACGAGTGGAATACCATTGTGGAAGAAGTGATTCAGAAGGAAGAAAAATCGTCTTGGAAACCTTCATCCACCGAAACTA
AAAAAGCTCCAAAACCGCTTCGCATTAGCGATATTGATTCCACACAAGAAATTCGTTTGGACACGACAGACGGTGAATTA
AACCGTGTATTAGGCGGCGGATTGGTGCCCGGCTCATTAACACTTTTGGGTGGCGAACCAGGCATTGGAAAAAGTACACT
TTTATTACAGATTTCATTAAAATTACCTTATAAAACTTTATACGTTTCCGGCGAAGAAAGTCAGAAACAAATAAAAATGC
GTGCCGAACGGATTACACCAAACGGCGATAATTGTTTTATTTTAACCGAAACCAAAACACAAAATATATTTAAACAAATT
CAGGAAATTGACCCTGAAATTGTGATTATCGATTCCATTCAAACGCTACACACCGATTATATTGAATCGACTGCCGGAAG
TATTTCGCAAATACGCGAATGCACGGCTGAACTTATCAAATTTGCCAAAGAAACCAATGTTCCGGTGCTTTTGATTGGTC
ATATTACCAAAGACGGAACGATTGCCGGACCAAAAATTTTGGAACATATGGTCGATACCGTTTTGCAATTTGAAGGCGAT
CGAAATCACGTTTACCGAATTCTCCGTTCGCTTAAAAACCGATTTGGTTCTACGGCAGAAATTGGAATTTATGAAATGCA
AGGTTCCGGTTTGCGGGAAGTTGCCAATCCATCGGAAATTCTGATTTCACACAAAGACGAAGAACTTTCAGGAACTGCCA
TCGCTTCTACCTTAGAAGGTATGCGACCGTTGATGATTGAAATACAAGCTTTAGTCAGCACCGCAGTTTACGGAACACCT
CAACGAAGCACGACAGGTTATAATGCTAAACGACTGAACATGATTTTAGCGGTTTTAGAAAAACGTGCCGGATTTAGATT
GGGAGCAAAAGACGTTTTTTTAAATGTAACAGGCGGAATTTCTGTGGATGATCCTGCAATTGATTTGGCAGTTGTTGCAG
CTATTTTATCCTCCAACGAAGATATTCCGGTTGGGAAAGATTTTTGTTTTGCGGGAGAAGTAGGTTTAGCCGGAGAAATT
CGTCCTGTCAACCGCGTAGAACAACGCATTTTGGAAGCGGAGAAGTTAGGGTTTTCTACCATTTTTGTCTCGAAATACAA
TAAAATTTCGTTGAAAGAAACATTGATTCAAGTGAAATTGGTGGCGAAGATTGAAGATGTTGTAAGCGAACTATTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(59-219)

Subunit ChlI of Mg-chelatase (ChlI)

(315-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

49.453

100

0.499
  radA Streptococcus pneumoniae Rx1

49.561

100

0.499
  radA Streptococcus pneumoniae D39

49.561

100

0.499
  radA Streptococcus pneumoniae R6

49.561

100

0.499
  radA Streptococcus pneumoniae TIGR4

49.561

100

0.499
  radA Streptococcus mitis SK321

49.231

100

0.494
  radA Bacillus subtilis subsp. subtilis str. 168

50.698

94.923

0.481