Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   M0D58_RS08430 Genome accession   NZ_CP096203
Coordinates   1963125..1964474 (+) Length   449 a.a.
NCBI ID   WP_169232197.1    Uniprot ID   -
Organism   Chryseobacterium nepalense strain AC3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958125..1969474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D58_RS08415 (M0D58_08415) - 1959832..1961439 (-) 1608 WP_248394917.1 CTP synthase -
  M0D58_RS08420 (M0D58_08420) - 1961534..1961962 (+) 429 WP_248394918.1 hypothetical protein -
  M0D58_RS08425 (M0D58_08425) - 1962017..1962586 (-) 570 WP_248394919.1 YceI family protein -
  M0D58_RS08430 (M0D58_08430) radA 1963125..1964474 (+) 1350 WP_169232197.1 DNA repair protein RadA Machinery gene
  M0D58_RS08435 (M0D58_08435) - 1964534..1965088 (+) 555 WP_248394920.1 transposase -
  M0D58_RS08440 (M0D58_08440) - 1965018..1965749 (+) 732 WP_248394921.1 ACP phosphodiesterase -
  M0D58_RS08445 (M0D58_08445) - 1965751..1966251 (-) 501 WP_248394922.1 DUF6702 family protein -
  M0D58_RS08450 (M0D58_08450) - 1966248..1966550 (-) 303 WP_248394923.1 hypothetical protein -
  M0D58_RS08455 (M0D58_08455) - 1966526..1966768 (-) 243 WP_248394924.1 hypothetical protein -
  M0D58_RS08460 (M0D58_08460) - 1966834..1967412 (+) 579 WP_248394925.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49840.38 Da        Isoelectric Point: 6.6119

>NTDB_id=680301 M0D58_RS08430 WP_169232197.1 1963125..1964474(+) (radA) [Chryseobacterium nepalense strain AC3]
MAKLKTAYFCQNCGTQYSQWMGQCKNCGQWNTLVEEVVEKTSSKTPPFSKSKQHVINIIEVETSEEPRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLTDIQNPNCFLFTETSLEKILHEAKKL
DPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRANKNRFGSTSEIGIYEMVSQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEHYCFAGEIGLSGEIRPI
AQAEQRITEAEKLGYEKIFISNLNKLPKRKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=680301 M0D58_RS08430 WP_169232197.1 1963125..1964474(+) (radA) [Chryseobacterium nepalense strain AC3]
ATGGCAAAACTTAAAACAGCATATTTCTGTCAGAACTGCGGAACACAATATTCCCAATGGATGGGGCAATGCAAAAACTG
CGGGCAATGGAATACCCTGGTGGAAGAAGTAGTAGAAAAAACCTCATCAAAAACACCTCCGTTTTCAAAATCAAAACAGC
ACGTGATCAACATCATTGAGGTTGAAACCAGCGAAGAACCTAGAATAAAAACCCCTTCCGAAGAACTCAACCGCGTTTTG
GGTGGCGGAATTGTTTTAGGATCCGTAACCCTTATTGGCGGAGAGCCCGGAATCGGCAAATCTACCCTGCTTCTTCAGCT
GGCTTTAAAAATGAAGAAAAAAATCTTCTATGTTTCCGGGGAAGAAAGTGCTTCGCAGATCAAGATGAGAGCCGACAGAT
TAACGGATATTCAGAATCCCAATTGTTTTTTGTTCACAGAAACCAGTCTTGAAAAAATTCTTCATGAAGCCAAAAAACTG
GACCCTGATTTCGTTATTATCGATTCCATTCAGACGCTGCAGTCTCAATTAATTGAAAGCTCGCCCGGAACGGTTTCTCA
AATCCGGGAATGTTCAAACGAAATTATTAAATATGCTAAAGAAAACAATGTTCCTGTATTTTTAGTGGGTCATATTACCA
AAGACGGGCAGATTGCCGGGCCAAAGGTGCTGGAACACATGGTTGATGTCGTTTTAAATTTTGACGGCGACAGAAATCAT
CTCTTCCGATTATTAAGAGCCAACAAAAACCGTTTTGGATCCACTTCGGAAATCGGAATTTATGAAATGGTTTCCCAGGG
ATTAAAAGAAATTAAAAATCCTTCTGAAATCCTGATTACCAAAAAATTTGAAGAACTTTCCGGAAACTCTGTAGCCGTGA
CTTTGGAAGGAAACCGCCCGATGCTGCTGGAAATTCAGGCATTGGTAAGTACGGCCGTTTATGGAACCCCACAAAGAAGT
TCCACAGGTTTTGATGCAAAAAGACTAAATATGCTTCTTGCTGTTCTGGAAAAAAGAGCAGGTTTCCAGCTGGGTGCAAA
AGATGTTTTCTTAAATATCACAGGAGGAATAAAAACAGATGATCCGGCACTGGATCTAGCCGTTGTCGCCTCTATTCTTT
CCTCCAATGAAGATATTGCGATTTCCGAACATTATTGTTTTGCAGGAGAAATTGGCTTAAGCGGGGAAATTCGTCCGATT
GCACAGGCGGAACAGCGGATTACAGAAGCTGAAAAATTAGGCTATGAGAAAATTTTTATTTCCAATCTCAATAAACTTCC
AAAAAGAAAATTCGGAATCAAGATCGAAGAAGTAAGCAAAATTGAAGATTTCCATGAACGCCTTTTCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-217)

Subunit ChlI of Mg-chelatase (ChlI)

(338-422)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.558

100

0.499
  radA Streptococcus mitis NCTC 12261

47.527

100

0.492
  radA Streptococcus pneumoniae D39

47.414

100

0.49
  radA Streptococcus pneumoniae TIGR4

47.414

100

0.49
  radA Streptococcus pneumoniae R6

47.414

100

0.49
  radA Streptococcus pneumoniae Rx1

47.414

100

0.49
  radA Streptococcus mitis SK321

49.42

95.991

0.474