Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MY052_RS15620 Genome accession   NZ_CP096201
Coordinates   3254000..3254617 (-) Length   205 a.a.
NCBI ID   WP_035892396.1    Uniprot ID   A0AB35X8G7
Organism   Kluyvera ascorbata strain SK     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3249000..3259617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY052_RS15605 (MY052_15605) helD 3249242..3251296 (-) 2055 WP_202216119.1 DNA helicase IV -
  MY052_RS15610 (MY052_15610) - 3251419..3251865 (+) 447 WP_035892393.1 YccF domain-containing protein -
  MY052_RS15615 (MY052_15615) yccS 3251884..3254010 (+) 2127 WP_202216120.1 YccS family putative transporter -
  MY052_RS15620 (MY052_15620) sxy/tfoX 3254000..3254617 (-) 618 WP_035892396.1 TfoX/Sxy family DNA transformation protein Regulator
  MY052_RS15625 (MY052_15625) sulA 3254836..3255345 (+) 510 WP_035892397.1 SOS-induced cell division inhibitor SulA -
  MY052_RS15630 (MY052_15630) ompA 3255700..3256755 (+) 1056 WP_202216121.1 porin OmpA -
  MY052_RS15635 (MY052_15635) matP 3256841..3257296 (-) 456 WP_202216122.1 macrodomain Ter protein MatP -
  MY052_RS15640 (MY052_15640) - 3257481..3259241 (+) 1761 WP_202216123.1 AAA family ATPase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23532.50 Da        Isoelectric Point: 10.2091

>NTDB_id=680288 MY052_RS15620 WP_035892396.1 3254000..3254617(-) (sxy/tfoX) [Kluyvera ascorbata strain SK]
MKKISYKRIYQSQKYFSLLGKIKSRALFGGYSLAVNDAVFAMVSEGELYLRMCEESATYQAQHSPPLLTLRKRGCSQQLK
YFHVGERLWSDEPVLLQLGKFSLEDALREKKQQKSLRIKDLPNLSFHMELLLSEAGIKDAQMLQHLGAEMAWIRLRKIRK
QLSINVLYSLEGAIMGVHSAALPAQRRQELQEWALAHVKTEGVRP

Nucleotide


Download         Length: 618 bp        

>NTDB_id=680288 MY052_RS15620 WP_035892396.1 3254000..3254617(-) (sxy/tfoX) [Kluyvera ascorbata strain SK]
ATGAAGAAAATATCATATAAACGGATTTATCAGTCCCAGAAATATTTTTCGCTGTTGGGCAAAATCAAGTCGCGGGCGCT
GTTTGGTGGCTATAGTCTTGCCGTCAATGATGCGGTATTTGCAATGGTCTCTGAAGGGGAACTCTACCTGAGGATGTGCG
AGGAAAGTGCGACCTATCAGGCTCAGCATTCGCCTCCATTACTGACATTACGTAAGCGAGGGTGTTCACAGCAGTTAAAG
TATTTCCATGTTGGCGAGCGGCTCTGGTCTGACGAACCGGTCTTACTTCAGCTTGGCAAATTTTCTCTCGAGGATGCGCT
TCGAGAAAAGAAACAACAGAAATCATTACGGATAAAAGATCTGCCTAATCTCTCATTTCATATGGAGCTGTTGTTAAGTG
AAGCGGGAATTAAAGATGCTCAAATGCTTCAGCATCTGGGGGCAGAAATGGCATGGATTCGGCTGCGTAAGATTCGTAAG
CAGCTGAGTATTAATGTGCTGTATTCTCTGGAAGGGGCGATTATGGGCGTTCACTCAGCCGCGCTCCCGGCGCAACGGCG
CCAGGAGCTACAGGAATGGGCATTAGCCCACGTGAAAACGGAGGGGGTCAGGCCATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

54.872

95.122

0.522