Detailed information NTG0680285

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA29_RS07250
• Genome accession: NZ_CP109843
• Coordinates: 1530269..1531273 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA29
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1525269..1536273

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA29_RS07220 (PALA29_01427)	fghA	1525361..1526212 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA29_RS07225 (PALA29_01428)	ispF	1526283..1526756 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA29_RS07230 (PALA29_01429)	truD	1526753..1527820 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
PALA29_RS07235 (PALA29_01430)	surE	1527808..1528557 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA29_RS07240 (PALA29_01431)	-	1528590..1529225 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA29_RS07245 (PALA29_01432)	-	1529271..1530164 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA29_RS07250 (PALA29_01433)	rpoS	1530269..1531273 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA29_RS07255 (PALA29_01434)	fdxA	1531700..1532023 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA29_RS07260 (PALA29_01435)	mutS	1532090..1534669 (-)	2580	WP_079279453.1	DNA mismatch repair protein MutS	-
PALA29_RS07265 (PALA29_01436)	-	1534729..1535703 (-)	975	WP_023114620.1	tyrosine-type recombinase/integrase	-
PALA29_RS32265	-	1535713..1535985 (-)	273	WP_318528907.1	DUF4224 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=680285 PALA29_RS07250 WP_003113871.1 1530269..1531273(+) (rpoS) [Pseudomonas aeruginosa strain PALA29]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=680285 PALA29_RS07250 WP_003113871.1 1530269..1531273(+) (rpoS) [Pseudomonas aeruginosa strain PALA29]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653