Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   MTO69_RS13830 Genome accession   NZ_CP096200
Coordinates   40834..41931 (+) Length   365 a.a.
NCBI ID   WP_248334987.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 35834..46931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS13795 (MTO69_13795) - 36030..37181 (+) 1152 WP_248334980.1 HD domain-containing phosphohydrolase -
  MTO69_RS13800 (MTO69_13800) - 37242..37487 (-) 246 WP_248334981.1 YgjV family protein -
  MTO69_RS13805 (MTO69_13805) - 37787..38104 (-) 318 WP_248334982.1 DUF496 family protein -
  MTO69_RS13810 (MTO69_13810) - 38290..38481 (+) 192 WP_248334983.1 hypothetical protein -
  MTO69_RS13815 (MTO69_13815) - 38517..39164 (+) 648 WP_248334984.1 YceH family protein -
  MTO69_RS13820 (MTO69_13820) - 39164..39472 (+) 309 WP_248334985.1 GIY-YIG nuclease family protein -
  MTO69_RS13825 (MTO69_13825) traF 39539..40696 (+) 1158 WP_248334986.1 conjugal transfer protein TraF -
  MTO69_RS13830 (MTO69_13830) luxP 40834..41931 (+) 1098 WP_248334987.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  MTO69_RS13835 (MTO69_13835) luxQ 41941..44484 (+) 2544 WP_248334988.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  MTO69_RS13840 (MTO69_13840) - 44500..45759 (-) 1260 WP_248334989.1 hydroxymethylglutaryl-CoA reductase -
  MTO69_RS13845 (MTO69_13845) - 45849..46133 (-) 285 WP_248334990.1 hypothetical protein -
  MTO69_RS13850 (MTO69_13850) - 46190..46414 (-) 225 WP_248335668.1 hypothetical protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41370.46 Da        Isoelectric Point: 4.9783

>NTDB_id=680272 MTO69_RS13830 WP_248334987.1 40834..41931(+) (luxP) [Vibrio sinaloensis strain YA2]
MSKKLLFSLLSLCSTSVLAQATQVLNGYWQYNEYLDAHPKQRQLTEQMSEAVRLPPTPLNTPQDKAISISVVYPGQQVSD
YWVRNIKAFEMRLEELGIRYSINQVFTRPNVDVRQQSLSLLDAIQNNTDYLIFTLDTTRHRKFIEHLLSSTETKLILQNI
TTPVRAWQDNQPFMYVGFDHINGTQVLEQYYQTAVPKGSRYSVLYFSEGYVSDARGDSFIEEMTHQNGYQLSSSFYTQAT
RQSGYQAAKNALEKDSELSFIYACSTDVALGAADALQELDRKGVLINGWGGGTAELEAIADGALDVTVMRMNDDTGIAMA
EAIKWDMEGKRVPQVYSGDFELVTSQDSTRKINQLKQRAFRYSDQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=680272 MTO69_RS13830 WP_248334987.1 40834..41931(+) (luxP) [Vibrio sinaloensis strain YA2]
ATGTCAAAAAAACTCCTCTTTTCTTTACTCTCGCTCTGCTCAACGTCGGTGCTCGCTCAAGCGACTCAAGTTCTCAATGG
TTACTGGCAGTACAATGAGTATCTCGATGCTCACCCCAAGCAAAGGCAGTTGACGGAACAGATGAGTGAAGCCGTTCGTC
TGCCACCGACGCCGCTCAATACTCCCCAAGATAAAGCGATTTCAATTTCGGTCGTTTATCCAGGTCAACAAGTTTCAGAC
TACTGGGTACGCAACATCAAGGCATTTGAAATGCGGTTGGAGGAGTTAGGGATTCGCTACAGCATCAACCAAGTGTTTAC
TCGTCCCAATGTCGACGTTAGGCAGCAAAGCTTATCTTTGCTCGATGCGATTCAAAACAATACTGATTACCTGATCTTTA
CCCTTGATACCACACGCCACCGTAAGTTTATTGAGCACCTATTAAGTTCAACCGAAACAAAACTGATCCTGCAAAATATC
ACCACGCCGGTGCGCGCCTGGCAAGACAATCAGCCATTTATGTACGTAGGGTTTGATCATATCAATGGCACCCAGGTTTT
AGAGCAGTACTATCAAACTGCGGTGCCAAAGGGCAGTCGTTACTCGGTTCTCTATTTCTCGGAGGGGTACGTCAGTGATG
CCCGAGGTGACAGCTTTATCGAAGAGATGACCCACCAAAATGGTTATCAGCTTTCGTCGTCTTTTTATACCCAAGCAACC
CGCCAATCGGGTTACCAAGCTGCCAAAAACGCGCTGGAAAAAGACAGTGAACTCAGCTTTATCTACGCTTGCTCTACCGA
CGTTGCTTTAGGTGCAGCCGATGCATTGCAAGAACTCGATCGAAAGGGCGTATTGATTAACGGCTGGGGTGGTGGTACTG
CAGAATTAGAGGCGATTGCTGATGGTGCTCTGGATGTTACCGTGATGAGAATGAACGACGATACGGGCATAGCCATGGCT
GAAGCGATTAAGTGGGATATGGAGGGCAAGCGGGTTCCGCAAGTCTATTCCGGTGATTTTGAGTTGGTGACCAGTCAAGA
TAGCACTCGTAAGATCAATCAGTTAAAACAACGTGCTTTTCGATACTCAGACCAGTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.587

100

0.641