Detailed information NTG0680264

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MTO69_RS11520
• Genome accession: NZ_CP096199
• Coordinates: 2561467..2562447 (-)
• Length: 326 a.a.
• NCBI ID: WP_248329377.1
• Uniprot ID: -
• Organism: Vibrio sinaloensis strain YA2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2556467..2567447

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MTO69_RS11500 (MTO69_11500)	rpsP	2557027..2557275 (-)	249	WP_005438039.1	30S ribosomal protein S16	-
MTO69_RS11505 (MTO69_11505)	ffh	2557519..2558904 (-)	1386	WP_248329372.1	signal recognition particle protein	-
MTO69_RS11510 (MTO69_11510)	-	2559113..2559907 (+)	795	WP_248329374.1	inner membrane protein YpjD	-
MTO69_RS11515 (MTO69_11515)	-	2560037..2561317 (+)	1281	WP_248329375.1	CNNM domain-containing protein	-
MTO69_RS11520 (MTO69_11520)	rpoS	2561467..2562447 (-)	981	WP_248329377.1	RNA polymerase sigma factor RpoS	Regulator
MTO69_RS11525 (MTO69_11525)	nlpD	2562519..2563418 (-)	900	WP_248329379.1	murein hydrolase activator NlpD	-
MTO69_RS11530 (MTO69_11530)	-	2563425..2564051 (-)	627	WP_248329381.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
MTO69_RS11535 (MTO69_11535)	surE	2564054..2564812 (-)	759	WP_248329383.1	5'/3'-nucleotidase SurE	-
MTO69_RS11540 (MTO69_11540)	truD	2564809..2565855 (-)	1047	WP_248334470.1	tRNA pseudouridine(13) synthase TruD	-
MTO69_RS11545 (MTO69_11545)	ispF	2565893..2566369 (-)	477	WP_248329385.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MTO69_RS11550 (MTO69_11550)	ispD	2566373..2567074 (-)	702	WP_248329387.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
MTO69_RS11555 (MTO69_11555)	ftsB	2567076..2567354 (-)	279	WP_248334471.1	cell division protein FtsB	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37330.16 Da
• Isoelectric Point: 4.6767

>NTDB_id=680264 MTO69_RS11520 WP_248329377.1 2561467..2562447(-) (rpoS) [Vibrio sinaloensis strain YA2]
MSISNTATKVEEFDIDSEATETLQSENSLKSSTTTETKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDDDIRNSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMENL
FSVTED

Nucleotide

• Length: 981 bp

>NTDB_id=680264 MTO69_RS11520 WP_248329377.1 2561467..2562447(-) (rpoS) [Vibrio sinaloensis strain YA2]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAATTTGACATCGATAGTGAAGCAACGGAAACGCTTCAATCAGAAAA
TTCTCTCAAGTCATCTACCACAACCGAGACCAAAGAAGAGTTTGATGCATCAACCAAAAGTTTAGATGCCACGCAGCTCT
ACCTCGGCGAAATCGGTTTTTCTCCACTCCTTACTGCTGAAGAAGAGGTGTTATATGCACGCCGCGCCCTACGTGGTGAC
GAAGCGGCACGCAAGCGTATGATTGAAAGTAACCTCCGTCTGGTGGTTAAAATCTCACGTCGTTACAGCAACCGCGGCTT
AGCCCTGCTTGATTTAATTGAAGAAGGCAACCTAGGTCTGATTCGCGCAGTAGAGAAGTTTGACCCAGAACGCGGTTTCC
GTTTCTCAACTTACGCCACCTGGTGGATTCGTCAGACTATTGAACGCGCGCTGATGAACCAAACTCGTACCATTCGTTTA
CCGATCCACGTGGTGAAAGAGCTTAATATTTACTTGCGAACTGCAAGAGAGCTGTCGCAAAAGCTTGACCATGAGCCAAC
GGCTGAAGAGATTGCCACTCAATTGGATAAACCCGTTGATGATGTGAGCAAAATGCTGCGCCTCAACGAGCGAATTAGCT
CAGTCGATACACCGATTGGCGGTGATGGCGAGAAAGCGCTGTTGGATATTATTCCCGACATCAACAACTCTGACCCAGAA
GTCTCGACTCAAGATGATGATATCCGTAATTCGCTTATCCACTGGTTAGATGAGCTGAATCCAAAACAGAAAGAGGTGCT
TGCGCGTCGTTTTGGTCTCTTGGGTTATGAGCCATCGACCTTGGAAGAGGTTGGACGTGAAATCAACCTAACTCGTGAGC
GTGTACGTCAGATCCAAGTTGAAGGACTACGCCGTCTGCGTGAGATTTTGATTAAACAAGGGTTGAATATGGAAAACCTT
TTCAGCGTGACGGAAGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.731	100	0.868