Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MTO69_RS07420 Genome accession   NZ_CP096199
Coordinates   1641061..1642485 (+) Length   474 a.a.
NCBI ID   WP_248327939.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1636061..1647485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS07395 (MTO69_07395) - 1636485..1637252 (-) 768 WP_248327931.1 adenosylcobinamide-GDP ribazoletransferase -
  MTO69_RS07400 (MTO69_07400) cobT 1637261..1638292 (-) 1032 WP_248334435.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  MTO69_RS07405 (MTO69_07405) - 1638296..1638907 (-) 612 WP_248327933.1 flavin reductase family protein -
  MTO69_RS07410 (MTO69_07410) - 1639400..1640110 (+) 711 WP_248327935.1 oxidoreductase -
  MTO69_RS07415 (MTO69_07415) - 1640148..1640816 (-) 669 WP_248327937.1 outer membrane beta-barrel protein -
  MTO69_RS07420 (MTO69_07420) sbcB 1641061..1642485 (+) 1425 WP_248327939.1 exodeoxyribonuclease I Machinery gene
  MTO69_RS07425 (MTO69_07425) - 1642642..1643007 (+) 366 WP_248327941.1 CidA/LrgA family protein -
  MTO69_RS07430 (MTO69_07430) - 1643007..1643684 (+) 678 WP_248327943.1 CidB/LrgB family autolysis modulator -
  MTO69_RS07435 (MTO69_07435) cdd 1643891..1644778 (+) 888 WP_248327945.1 cytidine deaminase -
  MTO69_RS07440 (MTO69_07440) - 1644844..1646049 (-) 1206 WP_248327947.1 HD-GYP domain-containing protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54277.59 Da        Isoelectric Point: 4.9244

>NTDB_id=680254 MTO69_RS07420 WP_248327939.1 1641061..1642485(+) (sbcB) [Vibrio sinaloensis strain YA2]
MQQEQQPTFFFFDYETWGISPAKDRPCQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQTAEAKGLIEP
EFIGKIHEQLATPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGINWPENDEGFI
SFKLEHLSVANGIEHANAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELIDIVNMTPLMHVSGMLGRECHY
TSWIVPVAWHPTNQNAVICVDLAKDPQALLDLDVDALTERLYTKHTELGADELPVPVKLVHLNKCPILAPAKTLTAENAA
KIGIDREQCLANLATLRQHPQVREKLIGVFSTERDYGQDDDVDSQLYKGFFSPADKAAMNIIRDTDPNNLAALDITFNDE
RIAPLLFRYRARNFPWTLDESEQQRWANHCRDYFESRIEEYMLNLENLVHEHESDAGKMAILKSIYQYVQKRVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=680254 MTO69_RS07420 WP_248327939.1 1641061..1642485(+) (sbcB) [Vibrio sinaloensis strain YA2]
ATGCAACAAGAGCAACAACCTACGTTTTTCTTCTTTGATTACGAAACGTGGGGGATCAGTCCCGCCAAAGATCGTCCTTG
CCAGTTTGCAGGCGTGCGCACCGACATGGACTTCAACATCATCGGCGAACCTCTTGTTATCTATTGCCAGCCACCGAGTG
ACTATTTGCCGTCACCTGAGGCCGCGCTAATCACGGGTATCACACCACAAACTGCCGAAGCGAAAGGGCTGATTGAGCCT
GAGTTCATTGGCAAAATTCATGAGCAATTGGCCACCCCCAATACCATTAGTTTGGGCTACAACAGCATCCGCTTTGATGA
TGAAGTCACCCGTTACACCTGCTATCGCAATTTTATCGATCCCTACGCGTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ATTTGCTCGATGTGATGCGCGCCTGTTATGCCCTGCGCCCGGAAGGAATCAACTGGCCAGAAAATGACGAGGGTTTCATC
AGTTTTAAGCTCGAACACCTGTCGGTTGCCAATGGTATCGAACACGCAAACGCCCACGATGCGATGGCGGATGTGATTGC
CACTATCGAGATGGCGAAAAAAGTGAAGGCAGCGCAACCTAAGTTGTTCGATTATTTTCTGAGTATGCGTCACAAACGAA
AGCTCAACGAGCTGATTGATATCGTCAACATGACCCCCTTGATGCATGTCTCCGGCATGCTCGGGCGTGAGTGTCACTAC
ACTAGCTGGATAGTGCCGGTCGCGTGGCACCCAACCAATCAAAATGCGGTCATCTGTGTTGATTTAGCCAAAGATCCGCA
AGCGCTGCTCGACCTAGATGTTGACGCCCTCACCGAGCGTTTGTACACCAAGCATACCGAACTCGGAGCCGATGAACTGC
CGGTTCCGGTGAAACTGGTACACCTTAACAAGTGCCCGATTCTCGCGCCAGCCAAAACGCTAACGGCAGAGAATGCCGCC
AAGATCGGCATCGATAGAGAACAGTGCTTGGCCAACCTAGCTACCCTACGCCAACACCCGCAGGTACGCGAAAAACTGAT
CGGTGTGTTTAGCACTGAGCGCGACTATGGACAAGACGATGATGTCGATAGTCAGCTATACAAGGGCTTTTTCTCTCCCG
CCGACAAAGCGGCCATGAACATCATTCGCGATACTGATCCAAACAATCTCGCCGCCCTGGATATCACCTTCAACGATGAG
CGGATTGCACCGCTCCTGTTTAGATACCGAGCGCGCAACTTTCCGTGGACACTGGATGAATCGGAGCAACAACGCTGGGC
GAACCACTGCCGTGACTACTTCGAAAGTCGTATTGAAGAGTACATGTTAAATTTGGAAAACTTAGTTCACGAACATGAGA
GTGACGCTGGAAAGATGGCTATTTTAAAATCCATCTACCAATATGTGCAAAAGCGAGTATCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.83

99.367

0.793