Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   MTO69_RS06670 Genome accession   NZ_CP096199
Coordinates   1460536..1462002 (-) Length   488 a.a.
NCBI ID   WP_248333984.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1455536..1467002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS06650 (MTO69_06650) - 1455562..1456989 (-) 1428 WP_248333947.1 oligosaccharide flippase family protein -
  MTO69_RS06655 (MTO69_06655) - 1457001..1458176 (-) 1176 WP_248333953.1 glycosyltransferase -
  MTO69_RS06660 (MTO69_06660) - 1458169..1459371 (-) 1203 WP_248333962.1 glycosyltransferase -
  MTO69_RS06665 (MTO69_06665) - 1459506..1460555 (-) 1050 WP_248333971.1 glycosyltransferase family 4 protein -
  MTO69_RS06670 (MTO69_06670) luxO 1460536..1462002 (-) 1467 WP_248333984.1 sigma-54 dependent transcriptional regulator Regulator
  MTO69_RS06675 (MTO69_06675) - 1462028..1464334 (-) 2307 WP_248333987.1 ATP-binding protein -
  MTO69_RS06680 (MTO69_06680) - 1464344..1465147 (-) 804 WP_248333995.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  MTO69_RS06685 (MTO69_06685) - 1465156..1465860 (-) 705 WP_248333998.1 chromosome partitioning protein ParA -

Sequence

Protein


Download         Length: 488 a.a.        Molecular weight: 54194.98 Da        Isoelectric Point: 5.9643

>NTDB_id=680253 MTO69_RS06670 WP_248333984.1 1460536..1462002(-) (luxO) [Vibrio sinaloensis strain YA2]
MKAKVLLIEDSTSLAILYKQYVKDEPYDLFHVETGREAIAFIERNIPQLVILDLKLPDMDGEQILDWINENQVPTSVVIA
TAHGSVDLAVNLVQKGAKDFLEKPINADRLKTSIALHLQQVKLESLVENIESKFDRNRFHGFIGSSLPMQGVYKIIDAVA
PTSASVFIVGESGTGKEVCAEAIHRESKRGDKPFIAINCGAIPKDLMESEIFGHVKGAFTGATTDRKGAASMASGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGANKELKVDVRIICATNRDPLVEVEAGRFREDLYYRVHVVPIEMPPLRERGNDI
LTLATHFLKVYAKEDGKRFAAVHRDAESTLKRYNWPGNVRQLQNIIRNIVVLNDDTHLRLEHLPQQVTHSKKAKPAVPPS
SAAAPSATIPTPISDTENPATVGSASDSNQQGNVTIRPMWQIEREAIQQAIDYCDGNVLNAAVLLELSPSTVYRKKQAWE
AEDEQQLV

Nucleotide


Download         Length: 1467 bp        

>NTDB_id=680253 MTO69_RS06670 WP_248333984.1 1460536..1462002(-) (luxO) [Vibrio sinaloensis strain YA2]
ATGAAAGCAAAAGTATTATTGATTGAAGATTCAACTTCATTGGCCATTTTGTACAAGCAGTACGTTAAAGACGAGCCTTA
TGACTTGTTTCACGTCGAAACCGGTCGAGAGGCGATCGCGTTTATTGAACGTAATATTCCCCAACTGGTGATCCTTGATT
TAAAACTTCCCGACATGGACGGCGAACAGATCCTAGACTGGATCAACGAAAACCAAGTCCCGACCTCAGTGGTCATTGCC
ACCGCTCATGGCTCAGTGGATCTCGCCGTCAACCTAGTGCAAAAAGGCGCTAAAGACTTCCTCGAAAAGCCTATCAATGC
GGATCGGCTAAAAACCTCCATCGCACTGCATCTGCAACAAGTGAAACTAGAGAGCTTAGTTGAAAACATCGAATCAAAAT
TCGACCGTAATCGCTTCCACGGTTTTATCGGCTCGAGTTTACCTATGCAAGGGGTATACAAAATTATCGATGCTGTCGCC
CCAACCTCAGCGAGCGTATTTATCGTTGGAGAGAGTGGTACAGGTAAAGAGGTCTGCGCAGAGGCGATTCATCGCGAAAG
CAAACGCGGCGACAAACCGTTTATCGCGATTAACTGCGGTGCGATCCCCAAAGATCTGATGGAGAGCGAGATTTTTGGCC
ACGTAAAAGGCGCATTTACTGGCGCCACGACCGACCGCAAGGGCGCCGCTTCAATGGCCAGCGGTGGCACACTTTTTCTT
GATGAGCTGTGTGAAATGGAACTCGAAATGCAGAAGAAGCTGCTGCGTTTCTTACAAACTGGCACCTTTACCCCGCTTGG
TGCCAACAAAGAGCTCAAAGTGGATGTGCGGATAATCTGCGCCACCAACCGCGATCCATTAGTTGAAGTTGAAGCGGGCC
GCTTTCGTGAAGATCTCTATTATCGCGTTCATGTGGTGCCAATTGAAATGCCGCCGTTACGTGAGCGCGGCAATGACATT
CTTACCCTAGCGACGCATTTCTTAAAAGTGTACGCCAAAGAGGATGGCAAACGCTTCGCTGCAGTTCATCGTGACGCCGA
GTCGACGCTGAAACGGTATAACTGGCCCGGAAACGTTCGACAGCTACAAAATATCATTCGAAATATTGTTGTGCTTAACG
ACGATACGCATTTGCGTTTGGAACATCTGCCGCAGCAAGTCACCCACAGTAAAAAAGCCAAACCAGCCGTTCCCCCCAGC
AGCGCAGCAGCGCCCAGCGCTACGATCCCGACGCCAATATCTGACACAGAAAACCCGGCCACAGTTGGCTCTGCCTCAGA
TAGCAATCAACAAGGTAACGTCACTATAAGACCAATGTGGCAAATTGAACGTGAAGCGATTCAGCAAGCTATCGATTACT
GCGATGGCAATGTACTCAACGCTGCGGTATTGCTCGAGCTCAGCCCTTCAACTGTGTATCGCAAAAAACAAGCCTGGGAA
GCGGAAGATGAGCAGCAACTCGTCTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Bacterial regulatory protein, Fis family (HTH_8)

(439-475)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50.422

97.131

0.49