Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MTO69_RS02010 Genome accession   NZ_CP096199
Coordinates   421372..421890 (+) Length   172 a.a.
NCBI ID   WP_248330671.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 416372..426890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS02000 (MTO69_02000) - 416724..419582 (+) 2859 WP_248330667.1 pitrilysin family protein -
  MTO69_RS02005 (MTO69_02005) gshA 419691..421259 (+) 1569 WP_248330669.1 glutamate--cysteine ligase -
  MTO69_RS02010 (MTO69_02010) luxS 421372..421890 (+) 519 WP_248330671.1 S-ribosylhomocysteine lyase Regulator
  MTO69_RS02015 (MTO69_02015) - 421935..422411 (-) 477 WP_248330673.1 RDD family protein -
  MTO69_RS02025 (MTO69_02025) - 423417..424112 (+) 696 WP_248330675.1 VC0807 family protein -
  MTO69_RS02030 (MTO69_02030) - 424188..425660 (-) 1473 WP_248330677.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19001.82 Da        Isoelectric Point: 4.8443

>NTDB_id=680247 MTO69_RS02010 WP_248330671.1 421372..421890(+) (luxS) [Vibrio sinaloensis strain YA2]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPQEQQVADAWLAAMKDVLKVENQNKIPELNEYQCGTAAMHSLDEAKQIAEAILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=680247 MTO69_RS02010 WP_248330671.1 421372..421890(+) (luxS) [Vibrio sinaloensis strain YA2]
ATGCCGTTACTTGATAGTTTTACCGTTGATCATACACGAATGAATGCCCCGGCTGTTCGCGTTGCAAAAACGATGACCAC
ACCAAAGGGTGACACCATCACCGTGTTTGATTTACGTTTTACTGCGCCTAATAAGGATATTCTGTCTGAAAAAGGTATTC
ATACTTTAGAGCACCTTTATGCTGGCTTTATGCGCAATCACCTTAACAGCGACAGTGTGGAAATCATTGATATTTCACCT
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTGATTGGTACCCCACAAGAGCAGCAAGTGGCTGACGCTTGGCTAGCGGC
GATGAAAGATGTGCTGAAAGTTGAGAATCAAAACAAGATCCCTGAGCTGAATGAGTATCAATGTGGCACCGCAGCGATGC
ACTCTTTGGATGAAGCGAAACAGATTGCCGAAGCTATTTTGGCCGCTGGCATTTCAGTCAATAAAAACGACGAGCTAGCG
CTTCCAGAAGCGATGCTGAAAGAGCTTAAAGTCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866