Detailed information NTG0680109

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA26_RS07285
• Genome accession: NZ_CP109835
• Coordinates: 1544633..1545637 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA26
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1539633..1550637

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA26_RS07255 (PALA26_01438)	fghA	1539725..1540576 (+)	852	WP_003138034.1	S-formylglutathione hydrolase	-
PALA26_RS07260 (PALA26_01439)	ispF	1540647..1541120 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA26_RS07265 (PALA26_01440)	truD	1541117..1542184 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PALA26_RS07270 (PALA26_01441)	surE	1542172..1542921 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA26_RS07275 (PALA26_01442)	-	1542954..1543589 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA26_RS07280 (PALA26_01443)	-	1543635..1544528 (+)	894	WP_003138035.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA26_RS07285 (PALA26_01444)	rpoS	1544633..1545637 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA26_RS07290 (PALA26_01445)	fdxA	1546063..1546386 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA26_RS07295 (PALA26_01446)	mutS	1546453..1549020 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PALA26_RS07300 (PALA26_01447)	-	1549146..1550153 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=680109 PALA26_RS07285 WP_003113871.1 1544633..1545637(+) (rpoS) [Pseudomonas aeruginosa strain PALA26]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=680109 PALA26_RS07285 WP_003113871.1 1544633..1545637(+) (rpoS) [Pseudomonas aeruginosa strain PALA26]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653