Detailed information NTG0680010

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA25_RS06760
• Genome accession: NZ_CP109834
• Coordinates: 1450372..1451376 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA25
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1445372..1456376

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA25_RS06730 (PALA25_01337)	fghA	1445464..1446315 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA25_RS06735 (PALA25_01338)	ispF	1446386..1446859 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA25_RS06740 (PALA25_01339)	truD	1446856..1447923 (+)	1068	WP_017148389.1	tRNA pseudouridine(13) synthase TruD	-
PALA25_RS06745 (PALA25_01340)	surE	1447911..1448660 (+)	750	WP_034017764.1	5'/3'-nucleotidase SurE	-
PALA25_RS06750 (PALA25_01341)	-	1448693..1449328 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA25_RS06755 (PALA25_01342)	-	1449374..1450267 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA25_RS06760 (PALA25_01343)	rpoS	1450372..1451376 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA25_RS06765 (PALA25_01344)	fdxA	1451802..1452125 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA25_RS06770 (PALA25_01345)	mutS	1452192..1454759 (-)	2568	WP_114230167.1	DNA mismatch repair protein MutS	-
PALA25_RS06775 (PALA25_01346)	-	1455044..1455832 (+)	789	WP_124156555.1	hypothetical protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=680010 PALA25_RS06760 WP_003113871.1 1450372..1451376(+) (rpoS) [Pseudomonas aeruginosa strain PALA25]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=680010 PALA25_RS06760 WP_003113871.1 1450372..1451376(+) (rpoS) [Pseudomonas aeruginosa strain PALA25]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653