Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABRG53_RS14220 Genome accession   NZ_AP017560
Coordinates   3096466..3097911 (-) Length   481 a.a.
NCBI ID   WP_126387286.1    Uniprot ID   -
Organism   Pseudanabaena sp. ABRG5-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3091466..3102911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRG53_RS14210 (ABRG53_2796) - 3092071..3092406 (+) 336 WP_126387284.1 2Fe-2S iron-sulfur cluster-binding protein -
  ABRG53_RS14215 (ABRG53_2797) smc 3092813..3096409 (+) 3597 WP_126387285.1 chromosome segregation protein SMC -
  ABRG53_RS14220 (ABRG53_2798) radA 3096466..3097911 (-) 1446 WP_126387286.1 DNA repair protein RadA Machinery gene
  ABRG53_RS14225 (ABRG53_2799) - 3097953..3098660 (-) 708 WP_126387287.1 hypothetical protein -
  ABRG53_RS14230 (ABRG53_2800) - 3098657..3099850 (-) 1194 WP_126387288.1 AAA family ATPase -
  ABRG53_RS26480 - 3099984..3100109 (-) 126 WP_263972141.1 hypothetical protein -
  ABRG53_RS14235 (ABRG53_2801) - 3100305..3101174 (+) 870 WP_162615665.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52043.86 Da        Isoelectric Point: 6.5084

>NTDB_id=67998 ABRG53_RS14220 WP_126387286.1 3096466..3097911(-) (radA) [Pseudanabaena sp. ABRG5-3]
MAKAKSRYVCNNCGEDFPQMYGKCPACSSWGTLQEEPIPIISTNTNAIATFSHLGTAKSTGKAKPRESLTLSQITDNDQA
RSPSGYEELDRVLGGGIVAGSLVLIGGEPGIGKSTLLLGMAQKLMSRYPTLYVCAEESAQQVKLRSQRLGILEENSEDLY
LLAETDLETVLRELQSLRPKVAVIDSIQALYFSNLNAAPGSVSQVRECTAALMRVAKRENISLFIVGHVTKEGSIAGPKV
LEHMVDTVLYFEGDRFATHRLLRSVKNRFGATQEIGVFEMIDRGLREVSNPSELFLGNRDESVPGTATIVACEGTRPIVV
ELQALVSPTSYSSPRRTTTGIETNRFLQILAVLEKRIGIPLSKLDAYVAAAGGLNVAEPAVDLGVAIAVAASFRDRTVDP
RTVMIGEVGLGGQVRPVSQLDMRLKEAAKLGFKRAIIPSMQVMQNYGMEIVPVTKVLDAIVAALPRTKFEVSKPSDDSLD
E

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=67998 ABRG53_RS14220 WP_126387286.1 3096466..3097911(-) (radA) [Pseudanabaena sp. ABRG5-3]
ATGGCAAAAGCAAAATCTCGATATGTATGTAATAACTGCGGAGAAGACTTCCCGCAGATGTATGGGAAATGTCCCGCTTG
CTCCAGTTGGGGAACCTTGCAAGAGGAACCAATTCCTATCATCTCCACAAATACCAATGCGATCGCCACTTTCTCTCATC
TTGGTACAGCCAAATCTACAGGCAAAGCAAAACCTAGAGAATCCTTAACCCTCTCACAAATTACCGACAATGACCAAGCC
CGATCGCCTTCTGGTTATGAAGAACTCGATCGCGTCTTAGGTGGTGGTATTGTCGCAGGTTCCCTTGTGCTAATTGGCGG
TGAACCGGGGATTGGCAAAAGTACGCTGTTATTGGGCATGGCGCAAAAATTGATGAGTCGCTATCCCACACTCTATGTCT
GTGCCGAGGAGTCAGCGCAACAGGTCAAATTGCGATCGCAGAGATTAGGAATTTTAGAAGAGAACTCTGAAGATCTCTAT
TTATTAGCGGAAACAGATTTAGAAACGGTCTTAAGAGAATTGCAATCTCTTCGCCCCAAGGTTGCTGTCATCGATAGTAT
TCAAGCGCTCTACTTCTCCAACTTAAATGCTGCCCCCGGTTCCGTTTCCCAAGTGAGGGAATGTACGGCGGCGCTGATGC
GAGTGGCGAAGCGAGAGAATATTTCGCTATTTATCGTCGGTCATGTGACTAAGGAAGGCTCGATCGCAGGGCCTAAAGTA
TTAGAACATATGGTGGATACTGTTCTTTATTTTGAAGGCGATCGCTTTGCCACGCACAGATTATTGCGATCGGTCAAAAA
TCGCTTTGGCGCAACACAGGAAATTGGCGTATTTGAGATGATTGATCGCGGTTTGCGTGAAGTTTCCAATCCTTCGGAGT
TATTTCTCGGCAATCGCGATGAATCTGTCCCTGGAACTGCCACGATTGTTGCCTGTGAAGGAACGCGCCCGATTGTGGTA
GAGTTGCAAGCTCTTGTCAGTCCTACTAGTTATTCGTCTCCGCGCCGCACGACTACGGGTATCGAGACTAATCGCTTCTT
GCAAATTCTCGCGGTTCTGGAAAAGCGGATCGGCATCCCTCTATCAAAACTTGATGCCTATGTGGCGGCGGCGGGTGGAT
TGAATGTGGCGGAACCTGCGGTGGATTTGGGAGTAGCGATCGCAGTGGCGGCAAGTTTTCGCGATCGTACTGTCGATCCG
CGCACAGTGATGATCGGTGAAGTGGGTTTGGGCGGGCAGGTGCGCCCCGTATCGCAATTAGATATGCGATTAAAGGAAGC
AGCAAAATTGGGCTTTAAACGGGCAATTATTCCTAGTATGCAGGTGATGCAAAATTATGGAATGGAAATAGTGCCTGTGA
CTAAAGTTTTAGATGCGATCGTGGCAGCTTTGCCGCGCACCAAGTTTGAAGTTTCTAAGCCAAGTGATGACTCACTGGAT
GAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(379-439)

KaiC (ATPase)

(83-266)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.282

97.297

0.499
  radA Streptococcus pneumoniae Rx1

50

91.06

0.455
  radA Streptococcus pneumoniae D39

50

91.06

0.455
  radA Streptococcus pneumoniae R6

50

91.06

0.455
  radA Streptococcus pneumoniae TIGR4

50

91.06

0.455
  radA Streptococcus mitis NCTC 12261

50

91.06

0.455
  radA Streptococcus mitis SK321

50

91.06

0.455

Multiple sequence alignment