Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ABRG53_RS03205 Genome accession   NZ_AP017560
Coordinates   726636..727745 (+) Length   369 a.a.
NCBI ID   WP_126385288.1    Uniprot ID   -
Organism   Pseudanabaena sp. ABRG5-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 721636..732745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRG53_RS03180 (ABRG53_0637) - 722139..722732 (-) 594 WP_126385278.1 hypothetical protein -
  ABRG53_RS03185 (ABRG53_0638) - 722856..723203 (-) 348 WP_126385280.1 FHA domain-containing protein -
  ABRG53_RS03190 (ABRG53_0639) - 723435..723815 (-) 381 WP_126385282.1 FHA domain-containing protein -
  ABRG53_RS03195 (ABRG53_0640) prfB 724342..725449 (+) 1108 WP_126385284.1 peptide chain release factor 2 -
  ABRG53_RS03200 (ABRG53_0641) - 725550..726089 (+) 540 WP_126385286.1 DUF4168 domain-containing protein -
  ABRG53_RS03205 (ABRG53_0642) pilM 726636..727745 (+) 1110 WP_126385288.1 type IV pilus assembly protein PilM Machinery gene
  ABRG53_RS03210 (ABRG53_0643) - 727752..728465 (+) 714 WP_126385290.1 PilN domain-containing protein -
  ABRG53_RS03215 (ABRG53_0644) - 728467..729222 (+) 756 WP_126385292.1 hypothetical protein -
  ABRG53_RS03220 (ABRG53_0645) - 729468..731804 (+) 2337 WP_162615606.1 secretin N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39866.74 Da        Isoelectric Point: 4.4856

>NTDB_id=67992 ABRG53_RS03205 WP_126385288.1 726636..727745(+) (pilM) [Pseudanabaena sp. ABRG5-3]
MFGLKFGGKSKKGIGIEITSEKVNLVQLRRKGQSSYKLVAHGSVELPEGIVEEGRILDPVALGESIRSLLAEKKVKVKKV
ATALPGRETVSRLIRLPAEIPDLELREMVLNQEASLYLPFPREDADVDYQKLGTSLDDDGIERIEILMVATPKEVTDSYM
QALEIAQLQVDVVEVSSFALIRAMHNELSRFSTLAEAVAIVDIEYEATEITVTVDGVPQFSRTFPIGTAQIQNAQLRAIN
LPPRRTTDMEMLSSTVVPVQSMDTASLAGGGNTPGDAAIMRVVGDLSDELRRSIDFYTSQSPGSDVVQLLIAGPGSCIGQ
LNEFFSQRLGIAASAIDPLTAIGVSVDGDIPIQDRMAMSVSLGLGLREV

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=67992 ABRG53_RS03205 WP_126385288.1 726636..727745(+) (pilM) [Pseudanabaena sp. ABRG5-3]
ATGTTCGGCTTAAAGTTTGGCGGAAAGTCTAAAAAAGGCATCGGAATCGAAATTACTTCCGAGAAGGTTAATCTTGTTCA
ATTGCGCCGTAAGGGGCAATCTTCCTATAAGTTAGTGGCGCATGGTAGCGTTGAGCTTCCTGAAGGAATCGTTGAAGAAG
GGCGCATTCTCGATCCTGTAGCGCTGGGAGAAAGTATTCGCAGTTTGCTTGCAGAGAAAAAAGTAAAGGTCAAGAAAGTT
GCGACAGCTCTACCTGGTCGTGAGACGGTTAGTCGCTTGATTCGCTTACCTGCGGAGATTCCCGATTTGGAATTACGCGA
AATGGTACTCAATCAGGAAGCTAGCCTATACCTACCATTTCCCCGTGAAGATGCTGACGTGGACTATCAAAAGCTAGGTA
CATCATTGGATGATGACGGTATTGAGCGCATTGAAATCCTGATGGTGGCAACGCCGAAGGAAGTAACCGATAGCTATATG
CAGGCTCTAGAAATAGCGCAGCTACAGGTTGACGTTGTGGAAGTCAGTAGCTTTGCACTGATTCGAGCAATGCACAATGA
GCTATCAAGATTTAGTACTCTCGCGGAAGCTGTGGCGATCGTTGATATTGAGTATGAGGCAACAGAAATTACTGTGACTG
TTGATGGCGTACCGCAATTTTCTAGAACCTTCCCAATTGGCACAGCGCAAATTCAAAATGCTCAGTTACGAGCCATTAAT
CTGCCACCACGGCGGACAACGGATATGGAAATGCTGAGTTCAACGGTTGTACCTGTGCAGTCTATGGACACTGCGAGCTT
AGCAGGTGGAGGCAATACTCCTGGTGATGCAGCAATCATGCGGGTTGTTGGTGATCTTTCCGATGAATTGCGCCGTTCTA
TTGATTTCTATACTAGTCAATCTCCTGGGTCAGATGTAGTGCAGCTATTGATTGCAGGTCCTGGCTCTTGTATTGGTCAG
TTGAATGAATTCTTTAGCCAACGCCTCGGTATTGCTGCAAGTGCGATCGATCCACTTACTGCTATAGGTGTATCTGTTGA
TGGTGATATTCCCATCCAAGATCGTATGGCGATGTCTGTGTCTCTAGGTTTAGGTTTGAGGGAGGTTTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(15-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

52.316

99.458

0.52

Multiple sequence alignment