Detailed information NTG0067992

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JLF28_RS05475
• Genome accession: NZ_AP022525
• Coordinates: 1156678..1157670 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain THO-003
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1151678..1162670

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JLF28_RS05445 (THOESC003_10710)	ispD	1151739..1152449 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JLF28_RS05450 (THOESC003_10720)	ispF	1152449..1152928 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JLF28_RS05455 (THOESC003_10730)	truD	1152925..1153974 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
JLF28_RS05460 (THOESC003_10740)	surE	1153955..1154716 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JLF28_RS05465 (THOESC003_10750)	pcm	1154710..1155336 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JLF28_RS05470 (THOESC003_10760)	nlpD	1155521..1156615 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
JLF28_RS05475 (THOESC003_10770)	rpoS	1156678..1157670 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JLF28_RS05480 (THOESC003_10780)	-	1157841..1158392 (-)	552	WP_001179444.1	flavodoxin family protein	-
JLF28_RS05485 (THOESC003_10790)	-	1158617..1159660 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
JLF28_RS05490 (THOESC003_10800)	ygbN	1159803..1161167 (-)	1365	WP_000104433.1	GntP family transporter	-
JLF28_RS05495 (THOESC003_10810)	ygbM	1161256..1162032 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=67992 JLF28_RS05475 WP_000081550.1 1156678..1157670(+) (rpoS) [Escherichia coli strain THO-003]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=67992 JLF28_RS05475 WP_000081550.1 1156678..1157670(+) (rpoS) [Escherichia coli strain THO-003]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715