Detailed information NTG0679907

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA23_RS06810
• Genome accession: NZ_CP109833
• Coordinates: 1452258..1453262 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA23
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1447258..1458262

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA23_RS06780 (PALA23_01347)	fghA	1447350..1448201 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
PALA23_RS06785	ispF	1448272..1448745 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA23_RS06790 (PALA23_01349)	truD	1448742..1449809 (+)	1068	WP_043089602.1	tRNA pseudouridine(13) synthase TruD	-
PALA23_RS06795 (PALA23_01350)	surE	1449797..1450546 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA23_RS06800 (PALA23_01351)	-	1450579..1451214 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA23_RS06805 (PALA23_01352)	-	1451260..1452153 (+)	894	WP_031639387.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA23_RS06810 (PALA23_01353)	rpoS	1452258..1453262 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA23_RS06815 (PALA23_01354)	fdxA	1453689..1454012 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA23_RS06820 (PALA23_01355)	mutS	1454079..1456646 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA23_RS06825 (PALA23_01356)	-	1456772..1457779 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=679907 PALA23_RS06810 WP_003113871.1 1452258..1453262(+) (rpoS) [Pseudomonas aeruginosa strain PALA23]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=679907 PALA23_RS06810 WP_003113871.1 1452258..1453262(+) (rpoS) [Pseudomonas aeruginosa strain PALA23]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653