Detailed information NTG0679888

Bioinformatically predicted

Overview

• Name: tsaP
• Type: Machinery gene
• Locus tag: PALA23_RS00100
• Genome accession: NZ_CP109833
• Coordinates: 21218..22243 (+)
• Length: 341 a.a.
• NCBI ID: WP_043089530.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA23
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 16218..27243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA23_RS00075 (PALA23_00015)	-	16406..16723 (-)	318	WP_003120685.1	tetratricopeptide repeat protein	-
PALA23_RS00080 (PALA23_00016)	trkA	16872..18245 (-)	1374	WP_003107053.1	Trk system potassium transporter TrkA	-
PALA23_RS00085 (PALA23_00017)	rsmB	18273..19577 (-)	1305	WP_016561456.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
PALA23_RS00090 (PALA23_00018)	fmt	19574..20518 (-)	945	WP_010793609.1	methionyl-tRNA formyltransferase	-
PALA23_RS00095 (PALA23_00019)	def	20573..21079 (-)	507	WP_003107059.1	peptide deformylase	-
PALA23_RS00100 (PALA23_00020)	tsaP	21218..22243 (+)	1026	WP_043089530.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
PALA23_RS00105 (PALA23_00021)	dprA	22378..23466 (+)	1089	WP_003118479.1	DNA-processing protein DprA	Machinery gene
PALA23_RS00110 (PALA23_00022)	-	23507..24064 (+)	558	WP_016561457.1	L-threonylcarbamoyladenylate synthase	-
PALA23_RS00115 (PALA23_00023)	-	24074..25051 (-)	978	WP_003111202.1	NADPH:quinone reductase	-
PALA23_RS00120 (PALA23_00024)	hemF	25242..26159 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
PALA23_RS00125 (PALA23_00025)	aroE	26217..27041 (+)	825	WP_003111201.1	shikimate dehydrogenase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37555.98 Da
• Isoelectric Point: 9.3358

>NTDB_id=679888 PALA23_RS00100 WP_043089530.1 21218..22243(+) (tsaP) [Pseudomonas aeruginosa strain PALA23]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTGAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide

• Length: 1026 bp

>NTDB_id=679888 PALA23_RS00100 WP_043089530.1 21218..22243(+) (tsaP) [Pseudomonas aeruginosa strain PALA23]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTATCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGATGAGA
AGACCTTCACCGGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

• LysM domain (LysM) (31-76)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393