Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   OH129_RS05820 Genome accession   NZ_CP109819
Coordinates   1145532..1145912 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain CC21NB04a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140532..1150912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH129_RS05795 (OH129_05795) aspS 1141045..1142796 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  OH129_RS05800 (OH129_05800) - 1142793..1143368 (+) 576 WP_002776379.1 adenylate kinase -
  OH129_RS05805 (OH129_05805) ppa 1143378..1143896 (+) 519 WP_002776378.1 inorganic diphosphatase -
  OH129_RS05810 (OH129_05810) msrA 1143944..1144444 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  OH129_RS05815 (OH129_05815) - 1144667..1145521 (-) 855 WP_370530364.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  OH129_RS05820 (OH129_05820) dprB 1145532..1145912 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  OH129_RS05825 (OH129_05825) dprA 1145909..1146679 (-) 771 WP_052777121.1 DNA-processing protein DprA Machinery gene
  OH129_RS05830 (OH129_05830) - 1146669..1147721 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  OH129_RS05835 (OH129_05835) ilvC 1147724..1148746 (-) 1023 WP_233908966.1 ketol-acid reductoisomerase -
  OH129_RS05840 (OH129_05840) - 1148869..1150803 (+) 1935 WP_002822670.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=679873 OH129_RS05820 WP_002776373.1 1145532..1145912(-) (dprB) [Campylobacter coli strain CC21NB04a]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=679873 OH129_RS05820 WP_002776373.1 1145532..1145912(-) (dprB) [Campylobacter coli strain CC21NB04a]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421