Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   JLF28_RS03820 Genome accession   NZ_AP022525
Coordinates   794900..796138 (-) Length   412 a.a.
NCBI ID   WP_001161824.1    Uniprot ID   A0A0H2VCB2
Organism   Escherichia coli strain THO-003     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 789900..801138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLF28_RS03810 (THOESC003_07520) - 792721..793737 (+) 1017 WP_200922636.1 XcbB/CpsF family capsular polysaccharide biosynthesis protein -
  JLF28_RS03815 (THOESC003_07530) - 793743..794738 (+) 996 WP_001208051.1 hypothetical protein -
  JLF28_RS03820 (THOESC003_07540) kpsS 794900..796138 (-) 1239 WP_001161824.1 capsular biosynthesis protein Regulator
  JLF28_RS03825 (THOESC003_07550) - 796173..798200 (-) 2028 WP_029700839.1 capsular polysaccharide biosynthesis protein -
  JLF28_RS03830 (THOESC003_07560) kdsB 798197..798937 (-) 741 WP_000030749.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JLF28_RS03835 (THOESC003_07570) - 798947..800623 (-) 1677 WP_001327874.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 48808.38 Da        Isoelectric Point: 10.1113

>NTDB_id=67987 JLF28_RS03820 WP_001161824.1 794900..796138(-) (kpsS) [Escherichia coli strain THO-003]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRALHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGGYYGGVKFENALGM
NKDFLFGSKSIS

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=67987 JLF28_RS03820 WP_001161824.1 794900..796138(-) (kpsS) [Escherichia coli strain THO-003]
ATGCAAGGCAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGCTCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCCTCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCACGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGCA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGTAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGACATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGGGGGTTATTATGGAGGAGTAAAATTTGAGAATGCATTGGGTATG
AATAAAGATTTTTTGTTTGGATCAAAGTCAATATCATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VCB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

94.417

0.376