Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MZN44_RS05200 Genome accession   NZ_CP096152
Coordinates   1016379..1017752 (-) Length   457 a.a.
NCBI ID   WP_003729197.1    Uniprot ID   A0A0E0USD9
Organism   Listeria monocytogenes strain FSL J2-0071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1011379..1022752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN44_RS05175 (MZN44_05175) epsC 1011480..1012094 (-) 615 WP_003726845.1 serine O-acetyltransferase EpsC -
  MZN44_RS05180 (MZN44_05180) gltX 1012494..1013969 (-) 1476 WP_003729193.1 glutamate--tRNA ligase -
  MZN44_RS05185 (MZN44_05185) ispF 1013988..1014461 (-) 474 WP_003729194.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MZN44_RS05190 (MZN44_05190) ispD 1014454..1015152 (-) 699 WP_003729195.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MZN44_RS05195 (MZN44_05195) - 1015172..1016245 (-) 1074 WP_003729196.1 PIN/TRAM domain-containing protein -
  MZN44_RS05200 (MZN44_05200) radA 1016379..1017752 (-) 1374 WP_003729197.1 DNA repair protein RadA Machinery gene
  MZN44_RS05205 (MZN44_05205) - 1017899..1020361 (-) 2463 WP_003729198.1 ATP-dependent Clp protease ATP-binding subunit -
  MZN44_RS05210 (MZN44_05210) - 1020390..1021412 (-) 1023 WP_003729199.1 protein arginine kinase -
  MZN44_RS05215 (MZN44_05215) - 1021409..1021933 (-) 525 WP_003729200.1 UvrB/UvrC motif-containing protein -
  MZN44_RS05220 (MZN44_05220) - 1021946..1022404 (-) 459 WP_003723894.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50006.64 Da        Isoelectric Point: 7.6580

>NTDB_id=679826 MZN44_RS05200 WP_003729197.1 1016379..1017752(-) (radA) [Listeria monocytogenes strain FSL J2-0071]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIESETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=679826 MZN44_RS05200 WP_003729197.1 1016379..1017752(-) (radA) [Listeria monocytogenes strain FSL J2-0071]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCTAAATGGATGGGAAAATGTCC
GAATTGCAATGAGTGGAATCAAATGGTAGAAGCTTTGGAGCCATCAAAAAAATCGCGCTCAGCTTTTAATCATACGGGGG
AGCCTTCGAAAGCGACTCCGATTACTCAAATAGAAAGTGAAACAGAAAAACGTGTCGAAACCAATATGCCGGAGTTAAAT
AGAGTTCTTGGTGGAGGTGTGGTTCCAGGATCTATGGTACTTGTCGGCGGGGACCCTGGTATCGGGAAGTCGACTTTATT
ACTGCAAGTTTCAGCTCAACTGACGCTCACAAATAAAAAAGTATTGTATATATCAGGAGAAGAATCTATCAAACAAACGA
AGCTGCGGGCGGAACGCTTGCAAGTTTCGGGAGATAATTTATATGTATATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTGAAGCCTGATTTTGTAGTCATTGACTCTATTCAGACGGTTTATCATCCGGATGTTACGAGTGCAGC
AGGTAGTGTTTCGCAAGTTAGGGAATGTACAGCGGCATTGATGCGAATTGCTAAAATGCAAAACATTGCAATCTTTATTG
TTGGGCATGTAACGAAGGAAGGTGCTATTGCGGGACCGCGTCTGCTTGAACATATGGTTGATACTGTGCTTTATTTTGAA
GGGGAGCGTCATCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAACGAAATGGGTATATTTGA
AATGCGAGATGTTGGACTAGTTGAAGTTGCTAATCCTTCCGAAGTGTTCTTGGAAGAACGTCTTGAAGGCGCTTCTGGCT
CAACGGTTGTAGCTTCTATGGAAGGGACTCGTCCGGTTCTTGTGGAAATTCAAGCGCTTGTTTCACCTACGATGTTTGGT
AATGCTAAGCGAATGGCGACAGGAATAGACTATAATAAAGTTTCGCTAATTATGGCCGTTTTAGAAAAAAGAGTAGGTTT
GATGCTACAAAATCAAGACGCTTACTTGAAAGCAGCGGGCGGGGTTAAGCTAGATGAACCTGCAGTGGATTTGGCGGTTG
CAGTGAGTGTGGCGTCTAGTTATCGTGATAAACCAACGAGAAGTACAGATTGTTTTATCGGAGAACTTGGACTTACGGGT
GAAATTCGTCGTGTAGCAAGAATTGAACAACGCGTGCAAGAAGCAGCAAAACTTGGCTTTAAGCGAATTTTTATTCCGAA
AAACAATGAAGGTACTTGGAAAATACCAAAAGACGTGCAAGTGGTTGGCGTGGAAACGATTGGAGAAGCTTTGAAGAAGG
CTTTACCAGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.64

99.781

0.685
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus mitis NCTC 12261

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643