Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MZN51_RS03835 Genome accession   NZ_CP096151
Coordinates   726397..728088 (+) Length   563 a.a.
NCBI ID   WP_003738883.1    Uniprot ID   A0A0B8RFK2
Organism   Listeria monocytogenes strain FSL W1-0110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 721397..733088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN51_RS03810 (MZN51_03810) - 721547..722428 (+) 882 WP_070037183.1 polyprenyl synthetase family protein -
  MZN51_RS03815 (MZN51_03815) - 722627..722827 (+) 201 WP_003719639.1 cold-shock protein -
  MZN51_RS03820 (MZN51_03820) dxs 722994..724913 (+) 1920 WP_077952929.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MZN51_RS03825 (MZN51_03825) - 724910..725734 (+) 825 WP_070037178.1 TlyA family RNA methyltransferase -
  MZN51_RS03830 (MZN51_03830) argR 725925..726374 (+) 450 WP_003722493.1 transcriptional regulator ArgR -
  MZN51_RS03835 (MZN51_03835) recN 726397..728088 (+) 1692 WP_003738883.1 DNA repair protein RecN Machinery gene
  MZN51_RS03840 (MZN51_03840) - 728217..729083 (+) 867 WP_070037175.1 phosphate acyltransferase -
  MZN51_RS03845 (MZN51_03845) buk 729220..730287 (+) 1068 WP_070037172.1 butyrate kinase -
  MZN51_RS03850 (MZN51_03850) lpdA 730302..731729 (+) 1428 WP_070037169.1 dihydrolipoyl dehydrogenase -
  MZN51_RS03855 (MZN51_03855) - 731754..732749 (+) 996 WP_003738888.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63518.26 Da        Isoelectric Point: 5.1296

>NTDB_id=679786 MZN51_RS03835 WP_003738883.1 726397..728088(+) (recN) [Listeria monocytogenes strain FSL W1-0110]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=679786 MZN51_RS03835 WP_003738883.1 726397..728088(+) (recN) [Listeria monocytogenes strain FSL W1-0110]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCATGGAGAAGAACGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAAGATAACCTTGCTTGCCGAAATGCG
TTAATTGAAAATGGGATAGATGCTTCGGATGATATGGTCGTACTAGAACGTAGCCTGTTTCGCTCGGGGAAAAATAGTTG
CCGAATTAATGGCAAGCTTGTAACTACAGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTATCATTACTTGATCGTTTCGCTTCTGACAAAATCAAGCCAGCATTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACAATCGAGAAAGAGTGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCGCAACGTCTGGATATGCTTCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGCT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAGCTTAACGAAAATTTACAAGGGGCTTATGCCGCGATTCAAGGT
GAGCCTGGTGGGCTGGAATTTGTTGGAGAAGCAATGCGCCAAATGGAAGCAGCGGCGAGTATTCATACGGATTATAAAGC
GGTTAGCGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGTATGAGTCAAATTAGGCAATCACTGGATCAGCTCG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGCAAAACA
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTTAAAGCAGAACTAACAAAACAGGCGAATACACTAACGGAAATCCGTAAAAAAGCGG
CTGTTACGTTAGAAAAGCAAATCAAACAAGAATTAAATCATTTATATATGGAGAAAGCCATTTTTAGTGTACGCTTTGAA
GCAAATAAAATGGAACTAACAGATTCAGGGCAAGATAGCGTCGTTTTCTATATGTCAACAAACCCGGGTGAACCTTTAAA
ACCATTAGCAAAAATCGCTTCGGGTGGAGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCACCAAG
GTATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTTGGCTCGCAAGTACTATGCATTAGCCATTTGCCTCAAGTTGCAGCAATGGCGAACCACCACTACTACAT
TACGAAAAAAGTCCAAAACAAACGGACAACAACTTCTGTTACAGTGCTTAAAGGTGAAGAGAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGTATAGAAGTCACTGAATTAACCAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B8RFK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.257

100

0.535